Sphingomonas edaphi strain DAC4

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas edaphi strain DAC4 is a rod-shaped bacterium notable for its single replicon. This strain possesses flagella, indicating that it has the capability for motility, which may play a role in its ecological interactions. The genomic details of Sphingomonas edaphi strain DAC4 are captured in the accession QXTF00000000.1, providing a reference point for further studies regarding its genetic makeup and potential applications. The presence of flagella suggests that Sphingomonas edaphi strain DAC4 may be adapted to environments where movement toward nutrients or away from harmful substances is advantageous. This motility could facilitate its role in biogeochemical cycles, as it might be involved in the degradation of organic compounds or in the maintenance of microbial diversity within its habitat. The ecological significance of Sphingomonas species often lies in their ability to degrade complex organic compounds, making them important players in soil and water ecosystems. Therefore, understanding the specific characteristics and capabilities of Sphingomonas edaphi strain DAC4 can provide insights into its potential contributions to nutrient cycling and ecological balance in its native environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas edaphi
Strainstrain DAC4

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas edaphi strain DAC4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas edaphi strain DAC4 contig5, whole genome shotgun

Gene Summary

Adenine Count

449324 bp

Thymine Count

448770 bp

Guanine Count

736304 bp

Cytosine Count

738754 bp

Genome Length

2373152 bp

Protein-coding Genes

2311 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna topoisomerase (atp-hydrolyzing) subunit bD3M59_06555Not AvailablePositive1278598 - 128106690638.5
endonucleaseD3M59_06560Not AvailablePositive1281035 - 128187730671.9
rna polymerase sigma-54 factorD3M59_06565Not AvailableNegative1281874 - 128333452591.5
lps export abc transporter atp-binding proteinD3M59_06570Not AvailableNegative1283353 - 128412628374.3
osta family proteinD3M59_06575Not AvailableNegative1284130 - 128466018195.8
lps export abc transporter periplasmic protein lptcD3M59_06580Not AvailableNegative1284666 - 128530423296.1
ribonuclease dD3M59_06585Not AvailableNegative1285307 - 128593023254.7
cold-shock proteinD3M59_06590Not AvailablePositive1286178 - 128701427806.2
gnat family n-acetyltransferaseD3M59_06595Not AvailablePositive1287100 - 128761819113.0
cisplatin damage response atp-dependent dna ligaseD3M59_06600Not AvailableNegative1287615 - 128921359448.8

Displaying genes 1301 – 1310 of 2362 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.