Rodentibacter pneumotropicus strain FD987

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pasteurellales

Family

Pasteurellaceae

Genus

Rodentibacter

Description

Rodentibacter pneumotropicus strain FD987 is a rod-shaped bacterium recognized for its association with the order Rodentia, specifically affecting rodents. This strain possesses a single replicon, indicating a simpler genetic structure compared to more complex organisms that may have multiple replicons. One notable health effect associated with Rodentibacter pneumotropicus is the development of abscesses in rodents. This condition can have significant implications for the health and well-being of affected rodent populations, potentially leading to complications if not addressed. The bacterium's pathogenicity highlights its role in the microbial ecology of rodent populations, where it may affect not only individual hosts but also the overall dynamics within rodent communities. The strain is cataloged under the accession number QXNK00000000.1, which provides a reference point for researchers interested in studying its genomic characteristics and pathogenic mechanisms further. Understanding the nature of Rodentibacter pneumotropicus strain FD987 can contribute to broader insights into rodent health and the microbiological factors that influence their populations. In summary, Rodentibacter pneumotropicus strain FD987 exemplifies a pathogen that plays a role in the health of rodent hosts, specifically through the formation of abscesses, which can impact rodent populations and their ecological interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusRodentibacter
SpeciesRodentibacter pneumotropicus
Strainstrain FD987

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Rodentia
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rodentibacter pneumotropicus strain FD987


Gene Summary

Adenine Count

710592 bp

Thymine Count

706189 bp

Guanine Count

475140 bp

Cytosine Count

469558 bp

Genome Length

2361479 bp

Protein-coding Genes

2071 genes

Non-Coding Genes

176 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
menaquinone-dependent protoporphyrinogen ix dehydrogenaseD3M81_02990Not AvailableNegative614991 - 61550620052.3
potassium transporterD3M81_02995Not AvailableNegative615506 - 61696953586.9
yigz family proteinD3M81_03000Not AvailableNegative616972 - 61759222655.3
sulfurtransferase tusaD3M81_03005Not AvailablePositive617704 - 6179439075.02
duf560 domain-containing proteinD3M81_03010Not AvailableNegative618013 - 61947057452.4
hypothetical proteinD3M81_03015Not AvailableNegative619529 - 62032628355.9
tonb-dependent receptorD3M81_03020Not AvailableNegative620475 - 623462113549.0
duf3298 domain-containing proteinD3M81_03025Not AvailableNegative623857 - 62475934271.2
selenocysteine-specific translation elongation factorD3M81_03030Not AvailableNegative624769 - 62663470246.6
l-seryl-trna(sec) selenium transferaseD3M81_03035Not AvailableNegative626631 - 62801651232.3

Displaying genes 731 – 740 of 2247 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Rodent abscessCausesPMC6814026

Displaying health effects 1 – 1 of 1 in total