Rodentibacter pneumotropicus strain FD987

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pasteurellales

Family

Pasteurellaceae

Genus

Rodentibacter

Description

Rodentibacter pneumotropicus strain FD987 is a rod-shaped bacterium recognized for its association with the order Rodentia, specifically affecting rodents. This strain possesses a single replicon, indicating a simpler genetic structure compared to more complex organisms that may have multiple replicons. One notable health effect associated with Rodentibacter pneumotropicus is the development of abscesses in rodents. This condition can have significant implications for the health and well-being of affected rodent populations, potentially leading to complications if not addressed. The bacterium's pathogenicity highlights its role in the microbial ecology of rodent populations, where it may affect not only individual hosts but also the overall dynamics within rodent communities. The strain is cataloged under the accession number QXNK00000000.1, which provides a reference point for researchers interested in studying its genomic characteristics and pathogenic mechanisms further. Understanding the nature of Rodentibacter pneumotropicus strain FD987 can contribute to broader insights into rodent health and the microbiological factors that influence their populations. In summary, Rodentibacter pneumotropicus strain FD987 exemplifies a pathogen that plays a role in the health of rodent hosts, specifically through the formation of abscesses, which can impact rodent populations and their ecological interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusRodentibacter
SpeciesRodentibacter pneumotropicus
Strainstrain FD987

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Rodentia
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rodentibacter pneumotropicus strain FD987

Gene Summary

Adenine Count

710592 bp

Thymine Count

706189 bp

Guanine Count

475140 bp

Cytosine Count

469558 bp

Genome Length

2361479 bp

Protein-coding Genes

2071 genes

Non-Coding Genes

176 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peroxiredoxin cD3M81_10790Not AvailableNegative2183809 - 218441122357.6
cystathionine beta-lyaseD3M81_10795Not AvailablePositive2184550 - 218574044187.2
udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl- meso-diaminopimelate ligaseD3M81_10800Not AvailablePositive2185848 - 218720349930.1
hypothetical proteinD3M81_10805Not AvailablePositive2187397 - 218790319037.9
sodium/glutamate symporterD3M81_10810Not AvailableNegative2188061 - 218927543659.4
dna topoisomerase iv subunit aD3M81_10815Not AvailableNegative2189309 - 219156783708.1
dna topoisomerase iv subunit bD3M81_10820Not AvailableNegative2191581 - 219347970264.0
lpxl/lpxp family kdo(2)-lipid iv(a) lauroyl/palmitoleoyl acyltransferaseD3M81_10825Not AvailableNegative2193556 - 219449135908.6
bifunctional d-glycero-beta-d-manno-heptose-7-phosphate kinase/d-glycero-beta-d-manno-heptose 1-phosphate adenylyltransferase hldeD3M81_10830Not AvailablePositive2194590 - 219602051861.4
30s ribosomal protein s15D3M81_10835Not AvailablePositive2196411 - 219668010166.4

Displaying genes 2071 – 2080 of 2247 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Rodent abscessCausesPMC6814026

Displaying health effects 1 – 1 of 1 in total