Rodentibacter pneumotropicus strain FD987

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pasteurellales

Family

Pasteurellaceae

Genus

Rodentibacter

Description

Rodentibacter pneumotropicus strain FD987 is a rod-shaped bacterium recognized for its association with the order Rodentia, specifically affecting rodents. This strain possesses a single replicon, indicating a simpler genetic structure compared to more complex organisms that may have multiple replicons. One notable health effect associated with Rodentibacter pneumotropicus is the development of abscesses in rodents. This condition can have significant implications for the health and well-being of affected rodent populations, potentially leading to complications if not addressed. The bacterium's pathogenicity highlights its role in the microbial ecology of rodent populations, where it may affect not only individual hosts but also the overall dynamics within rodent communities. The strain is cataloged under the accession number QXNK00000000.1, which provides a reference point for researchers interested in studying its genomic characteristics and pathogenic mechanisms further. Understanding the nature of Rodentibacter pneumotropicus strain FD987 can contribute to broader insights into rodent health and the microbiological factors that influence their populations. In summary, Rodentibacter pneumotropicus strain FD987 exemplifies a pathogen that plays a role in the health of rodent hosts, specifically through the formation of abscesses, which can impact rodent populations and their ecological interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusRodentibacter
SpeciesRodentibacter pneumotropicus
Strainstrain FD987

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Rodentia
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rodentibacter pneumotropicus strain FD987

Gene Summary

Adenine Count

710592 bp

Thymine Count

706189 bp

Guanine Count

475140 bp

Cytosine Count

469558 bp

Genome Length

2361479 bp

Protein-coding Genes

2071 genes

Non-Coding Genes

176 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
translation initiation factor if-1D3M81_08845Not AvailableNegative1795508 - 17957268285.23
16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase rsmaD3M81_08850Not AvailablePositive1795946 - 179680932938.9
bis(5'-nucleosyl)-tetraphosphatase (symmetrical)D3M81_08855Not AvailablePositive1796826 - 179765331950.4
hypothetical proteinD3M81_08860Not AvailablePositive1797664 - 179828724895.4
nad(p)/fad-dependent oxidoreductaseD3M81_08865Not AvailablePositive1798388 - 179972248848.8
bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase foldD3M81_08870Not AvailableNegative1799764 - 180061830873.5
Trna-proNot AvailableNot AvailablePositive1800793 - 1800869Not Available
hypothetical proteinD3M81_09225Not AvailablePositive1849770 - 185032721531.7
hcp family type vi secretion system effectorD3M81_09230Not AvailablePositive1850501 - 185101618893.3
type vi secretion system membrane subunit tssmD3M81_09235Not AvailableNegative1851151 - 1854837140905.0

Displaying genes 1761 – 1770 of 2247 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Rodent abscessCausesPMC6814026

Displaying health effects 1 – 1 of 1 in total