Rodentibacter pneumotropicus strain FD987

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pasteurellales

Family

Pasteurellaceae

Genus

Rodentibacter

Description

Rodentibacter pneumotropicus strain FD987 is a rod-shaped bacterium recognized for its association with the order Rodentia, specifically affecting rodents. This strain possesses a single replicon, indicating a simpler genetic structure compared to more complex organisms that may have multiple replicons. One notable health effect associated with Rodentibacter pneumotropicus is the development of abscesses in rodents. This condition can have significant implications for the health and well-being of affected rodent populations, potentially leading to complications if not addressed. The bacterium's pathogenicity highlights its role in the microbial ecology of rodent populations, where it may affect not only individual hosts but also the overall dynamics within rodent communities. The strain is cataloged under the accession number QXNK00000000.1, which provides a reference point for researchers interested in studying its genomic characteristics and pathogenic mechanisms further. Understanding the nature of Rodentibacter pneumotropicus strain FD987 can contribute to broader insights into rodent health and the microbiological factors that influence their populations. In summary, Rodentibacter pneumotropicus strain FD987 exemplifies a pathogen that plays a role in the health of rodent hosts, specifically through the formation of abscesses, which can impact rodent populations and their ecological interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusRodentibacter
SpeciesRodentibacter pneumotropicus
Strainstrain FD987

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Rodentia
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rodentibacter pneumotropicus strain FD987

Gene Summary

Adenine Count

710592 bp

Thymine Count

706189 bp

Guanine Count

475140 bp

Cytosine Count

469558 bp

Genome Length

2361479 bp

Protein-coding Genes

2071 genes

Non-Coding Genes

176 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ompw family proteinD3M81_07390Not AvailablePositive1521645 - 152231023936.7
phosphoribosylglycinamide formyltransferaseD3M81_07395Not AvailableNegative1522365 - 152300623849.6
phosphoribosylformylglycinamidine cyclo-ligaseD3M81_07400Not AvailableNegative1523064 - 152410137045.6
duf406 family proteinD3M81_07405Not AvailableNegative1524241 - 152452810238.0
transporterD3M81_07410Not AvailablePositive1524732 - 152605748133.4
methylated-dna--[protein]-cysteine s-methyltransferaseD3M81_07415Not AvailablePositive1526128 - 152666720295.4
dna mismatch repair endonuclease muthD3M81_07420Not AvailablePositive1526664 - 152732624384.6
marc family proteinD3M81_07425Not AvailableNegative1527391 - 152800822368.3
trna lysidine(34) synthetase tilsD3M81_07430Not AvailableNegative1528087 - 152937650563.4
pyridoxal kinaseD3M81_07435Not AvailableNegative1529376 - 153024231994.8

Displaying genes 1521 – 1530 of 2247 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Rodent abscessCausesPMC6814026

Displaying health effects 1 – 1 of 1 in total