Rodentibacter pneumotropicus strain 691_11

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pasteurellales

Family

Pasteurellaceae

Genus

Rodentibacter

Description

Rodentibacter pneumotropicus strain 691_11 is a rod-shaped bacterium primarily associated with the order Rodentia. This strain is noteworthy for its singular replicon, indicating a streamlined genomic structure that may contribute to its specific ecological niche. It has been documented to cause health effects in its rodent hosts, particularly leading to the formation of abscesses. The health implications of Rodentibacter pneumotropicus strain 691_11 highlight its potential role in affecting the well-being of rodent populations, which could have cascading effects on ecosystems where these animals serve as key species. The strain is cataloged under the accession number QXNJ00000000.1, which allows for its identification and further study in microbial research. Understanding the pathogenicity of Rodentibacter pneumotropicus strain 691_11 can provide insights into host-pathogen interactions within rodent species. The presence of abscesses suggests that this bacterium may exploit certain vulnerabilities in its hosts, possibly influencing their behavior or fitness. This relationship underscores the importance of studying microbial pathogens in wildlife, as they can significantly impact population dynamics and ecological balance within their environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusRodentibacter
SpeciesRodentibacter pneumotropicus
Strainstrain 691_11

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Rodentia
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rodentibacter pneumotropicus strain 691_11 contig_97, whole genome

Gene Summary

Adenine Count

681512 bp

Thymine Count

682557 bp

Guanine Count

450759 bp

Cytosine Count

454961 bp

Genome Length

2269789 bp

Protein-coding Genes

2007 genes

Non-Coding Genes

90 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinD3M79_02190Not AvailableNegative474321 - 47493522404.4
histidine--trna ligaseD3M79_02195Not AvailableNegative474954 - 47622547644.1
flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthaseD3M79_02200Not AvailableNegative476235 - 47734140113.6
helix-turn-helix domain-containing proteinD3M79_02205Not AvailableNegative477354 - 47842139507.9
type iv pilus biogenesis/stability protein pilwD3M79_02210Not AvailableNegative478411 - 47895620951.8
bifunctional trna (adenosine(37)-c2)-methyltransferase trmg/ribosomal rna large subunit methyltransferase rlmnD3M79_02215Not AvailableNegative478975 - 48012943079.1
d-alanyl-d-alanine carboxypeptidaseD3M79_02220Not AvailablePositive480345 - 48122933115.4
metal abc transporter substrate-binding proteinD3M79_02225Not AvailablePositive481479 - 48236032627.2
manganese/iron abc transporter atp-binding proteinD3M79_02230Not AvailablePositive482360 - 48326233558.4
metal abc transporter permeaseD3M79_02235Not AvailablePositive483270 - 48411830451.5

Displaying genes 461 – 470 of 2097 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Rodent abscessCausesPMC6814026

Displaying health effects 1 – 1 of 1 in total