Rodentibacter pneumotropicus strain 602_16

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pasteurellales

Family

Pasteurellaceae

Genus

Rodentibacter

Description

Rodentibacter pneumotropicus strain 602_16 is a rod-shaped bacterium that belongs to the phylum Proteobacteria. This strain is characterized by possessing a single replicon, which is notable as many bacteria can exhibit multiple replicons. It is known to infect hosts within the order Rodentia, indicating a specialization for this group of animals. The health effects associated with Rodentibacter pneumotropicus include the formation of abscesses in rodents. This suggests that the bacterium may play a role in opportunistic infections, particularly in conditions where the host's immune system is compromised or when there are breaches in the skin or mucosal barriers. The presence of abscesses can lead to significant health issues in affected rodents, impacting their well-being and potentially their longevity. The genomic data for Rodentibacter pneumotropicus strain 602_16 can be accessed under the accession number QXNE00000000.1, which provides a basis for further studies into its genetic makeup and pathogenic mechanisms. In summary, Rodentibacter pneumotropicus strain 602_16 is a rod-shaped bacterium with a single replicon that infects rodents and is associated with the development of abscesses. Understanding its role within rodent populations can provide insights into the ecology of infectious diseases in these hosts and their management in research and natural settings.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusRodentibacter
SpeciesRodentibacter pneumotropicus
Strainstrain 602_16

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Rodentia
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rodentibacter pneumotropicus strain 602_16 contig_118, whole

Gene Summary

Adenine Count

709714 bp

Thymine Count

706115 bp

Guanine Count

468419 bp

Cytosine Count

477367 bp

Genome Length

2361615 bp

Protein-coding Genes

2030 genes

Non-Coding Genes

247 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
septal ring lytic transglycosylase rlpa family proteinD3M73_03550Not AvailableNegative678702 - 67956531752.3
rod shape-determining protein rodaD3M73_03555Not AvailableNegative679618 - 68073341044.9
penicillin-binding protein 2D3M73_03560Not AvailableNegative680733 - 68268873718.7
23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmhD3M73_03565Not AvailableNegative682707 - 68317417353.2
ribosome silencing factorD3M73_03570Not AvailableNegative683228 - 68353611425.8
ncs2 family permeaseD3M73_03575Not AvailableNegative683695 - 68501145269.9
inorganic pyrophosphataseD3M73_03580Not AvailablePositive685189 - 68571919726.3
aldehyde dehydrogenase family proteinD3M73_03585Not AvailableNegative685824 - 68730253745.4
d-lactate dehydrogenaseD3M73_03590Not AvailableNegative687415 - 68910963995.5
udp-glucose 4-epimerase galeD3M73_03595Not AvailablePositive689292 - 69030837106.3

Displaying genes 751 – 760 of 2277 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

7 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00032855-methyltetrahydropteroyltri-L-glutamateC30H35N9O12Chemical structure of 5-methyltetrahydropteroyltri-L-glutamateNot available
Average713.663Da
Monoisotopic713.2427119Da
BASm0003333(2R)-3-phosphoglycerateC3H4O7PChemical structure of (2R)-3-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003346(2R)-2-phosphoglycerateC3H4O7PChemical structure of (2R)-2-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm00034561-(5-phospho-beta-D-ribosyl)-5-[(5-phospho-beta-D-ribosylamino)methylideneamino]imidazole-4-carboxamideC15H21N5O15P2Chemical structure of 1-(5-phospho-beta-D-ribosyl)-5-[(5-phospho-beta-D-ribosylamino)methylideneamino]imidazole-4-carboxamideNot available
Average573.2993Da
Monoisotopic573.0509381Da
BASm00035255-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamideC15H21N5O15P2Chemical structure of 5-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamideNot available
Average573.303Da
Monoisotopic573.0531333Da

Displaying 1–7 of 7 metabolites

Health Effects

Health ConditionRelationReference
Rodent abscessCausesPMC6814026

Displaying health effects 1 – 1 of 1 in total