Rodentibacter pneumotropicus strain 602_16

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pasteurellales

Family

Pasteurellaceae

Genus

Rodentibacter

Description

Rodentibacter pneumotropicus strain 602_16 is a rod-shaped bacterium that belongs to the phylum Proteobacteria. This strain is characterized by possessing a single replicon, which is notable as many bacteria can exhibit multiple replicons. It is known to infect hosts within the order Rodentia, indicating a specialization for this group of animals. The health effects associated with Rodentibacter pneumotropicus include the formation of abscesses in rodents. This suggests that the bacterium may play a role in opportunistic infections, particularly in conditions where the host's immune system is compromised or when there are breaches in the skin or mucosal barriers. The presence of abscesses can lead to significant health issues in affected rodents, impacting their well-being and potentially their longevity. The genomic data for Rodentibacter pneumotropicus strain 602_16 can be accessed under the accession number QXNE00000000.1, which provides a basis for further studies into its genetic makeup and pathogenic mechanisms. In summary, Rodentibacter pneumotropicus strain 602_16 is a rod-shaped bacterium with a single replicon that infects rodents and is associated with the development of abscesses. Understanding its role within rodent populations can provide insights into the ecology of infectious diseases in these hosts and their management in research and natural settings.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusRodentibacter
SpeciesRodentibacter pneumotropicus
Strainstrain 602_16

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Rodentia
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rodentibacter pneumotropicus strain 602_16 contig_118, whole

Gene Summary

Adenine Count

709714 bp

Thymine Count

706115 bp

Guanine Count

468419 bp

Cytosine Count

477367 bp

Genome Length

2361615 bp

Protein-coding Genes

2030 genes

Non-Coding Genes

247 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phenylalanine--trna ligase subunit alphaD3M73_10015Not AvailableNegative2024512 - 202550138118.8
outer membrane protein assembly factor bameD3M73_10020Not AvailableNegative2025876 - 202673631990.7
protease sohbD3M73_10025Not AvailableNegative2026948 - 202800639297.0
asparagine--trna ligaseD3M73_10030Not AvailablePositive2028148 - 202955152856.8
carbonate dehydrataseD3M73_10035Not AvailablePositive2029617 - 203030025961.1
ycgl domain-containing proteinD3M73_10040Not AvailableNegative2030541 - 203080710149.3
histoneD3M73_10045Not AvailableNegative2030875 - 203144119174.4
ribonucleoside-diphosphate reductase subunit alphaD3M73_10050Not AvailablePositive2031801 - 203407185467.4
ribonucleotide-diphosphate reductase subunit betaD3M73_10055Not AvailablePositive2034137 - 203526743326.3
pirin family proteinD3M73_10060Not AvailablePositive2035528 - 203625026747.3

Displaying genes 1961 – 1970 of 2277 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

7 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00032855-methyltetrahydropteroyltri-L-glutamateC30H35N9O12Chemical structure of 5-methyltetrahydropteroyltri-L-glutamateNot available
Average713.663Da
Monoisotopic713.2427119Da
BASm0003333(2R)-3-phosphoglycerateC3H4O7PChemical structure of (2R)-3-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003346(2R)-2-phosphoglycerateC3H4O7PChemical structure of (2R)-2-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm00034561-(5-phospho-beta-D-ribosyl)-5-[(5-phospho-beta-D-ribosylamino)methylideneamino]imidazole-4-carboxamideC15H21N5O15P2Chemical structure of 1-(5-phospho-beta-D-ribosyl)-5-[(5-phospho-beta-D-ribosylamino)methylideneamino]imidazole-4-carboxamideNot available
Average573.2993Da
Monoisotopic573.0509381Da
BASm00035255-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamideC15H21N5O15P2Chemical structure of 5-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamideNot available
Average573.303Da
Monoisotopic573.0531333Da

Displaying 1–7 of 7 metabolites

Health Effects

Health ConditionRelationReference
Rodent abscessCausesPMC6814026

Displaying health effects 1 – 1 of 1 in total