Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain S308 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1262456 bp
Thymine Count
1260045 bp
Guanine Count
1272289 bp
Cytosine Count
1272432 bp
Genome Length
5067372 bp
Protein-coding Genes
6432 genes
Non-Coding Genes
145 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| four-carbon acid sugar kinase family protein | D3C88_16800 | Not Available | Positive | 2316898 - 2317813 | 32526.2 |
| aconitate hydratase | D3C88_16805 | Not Available | Positive | 2317814 - 2318685 | 32250.3 |
| gtp cyclohydrolase ii | D3C88_16810 | Not Available | Negative | 2318749 - 2319324 | 21226.5 |
| 3,4-dihydroxy-2-butanone-4-phosphate synthase | D3C88_16815 | Not Available | Positive | 2319420 - 2320073 | 23340.8 |
| pilus assembly protein | D3C88_16820 | Not Available | Negative | 2320127 - 2321176 | 39311.2 |
| fimbrial assembly protein | D3C88_16825 | Not Available | Negative | 2321173 - 2321913 | 27389.4 |
| fimbrial biogenesis outer membrane usher protein | D3C88_16830 | Not Available | Negative | 2321929 - 2324451 | 93501.2 |
| fimbrial-like protein | D3C88_16835 | Not Available | Negative | 2324538 - 2325101 | 19716.3 |
| duf4051 domain-containing protein | D3C88_16840 | Not Available | Positive | 2325672 - 2325842 | 6768.36 |
| zinc transporter zupt | D3C88_16845 | Not Available | Negative | 2325904 - 2326545 | 22054.8 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





