Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain S308 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1262456 bp
Thymine Count
1260045 bp
Guanine Count
1272289 bp
Cytosine Count
1272432 bp
Genome Length
5067372 bp
Protein-coding Genes
6432 genes
Non-Coding Genes
145 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gnat family n-acetyltransferase | D3C88_16565 | Not Available | Negative | 2282656 - 2283108 | 17429.0 |
| type ii toxin-antitoxin system yafo family toxin | D3C88_16570 | Not Available | Negative | 2283118 - 2283516 | 15414.7 |
| antitoxin yafn | D3C88_16575 | Not Available | Negative | 2283519 - 2283812 | 11234.4 |
| dna polymerase iv | D3C88_16580 | Not Available | Negative | 2283864 - 2284919 | 39504.1 |
| pts n-acetylgalactosamine transporter subunit iid | D3C88_16585 | Not Available | Negative | 2284952 - 2285217 | 9820.12 |
| cellulose synthase regulator bcsb | D3C88_16590 | Not Available | Positive | 2285218 - 2285963 | 27824.5 |
| trimethylamine-n-oxide reductase tora | D3C88_16595 | Not Available | Positive | 2285964 - 2286353 | 13806.4 |
| phage tail tape measure protein | D3C88_16600 | Not Available | Positive | 2286356 - 2287963 | 58446.5 |
| phage tail protein | D3C88_16605 | Not Available | Positive | 2287960 - 2288233 | 10205.1 |
| antirestriction protein | D3C88_16610 | Not Available | Negative | 2288234 - 2288357 | 4838.75 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





