Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain S308 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1262456 bp
Thymine Count
1260045 bp
Guanine Count
1272289 bp
Cytosine Count
1272432 bp
Genome Length
5067372 bp
Protein-coding Genes
6432 genes
Non-Coding Genes
145 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| penicillin-binding protein 1c | D3C88_16005 | Not Available | Negative | 2216924 - 2217227 | 10633.8 |
| ribosomal rna small subunit methyltransferase d | D3C88_16010 | Not Available | Positive | 2217286 - 2217882 | 21678.8 |
| duf1145 domain-containing protein | D3C88_16015 | Not Available | Positive | 2217872 - 2217943 | 2779.75 |
| trehalose-phosphatase | D3C88_16020 | Not Available | Positive | 2218047 - 2218845 | 29135.9 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | D3C88_16025 | Not Available | Positive | 2218846 - 2219259 | 15010.1 |
| tryptophanase leader peptide | D3C88_16030 | Not Available | Positive | 2219501 - 2219575 | 2894.56 |
| tryptophanase | D3C88_16035 | Not Available | Positive | 2219796 - 2221211 | 52776.4 |
| low affinity tryptophan permease tnab | D3C88_16040 | Not Available | Positive | 2221303 - 2222218 | 33171.9 |
| restriction endonuclease | D3C88_16045 | Not Available | Negative | 2222309 - 2222509 | 7577.2 |
| superinfection exclusion protein b | D3C88_16050 | Not Available | Positive | 2222723 - 2223304 | 22442.5 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





