Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain S308 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1262456 bp
Thymine Count
1260045 bp
Guanine Count
1272289 bp
Cytosine Count
1272432 bp
Genome Length
5067372 bp
Protein-coding Genes
6432 genes
Non-Coding Genes
145 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutathione transferase | D3C88_15705 | Not Available | Negative | 2174274 - 2174738 | 17472.8 |
| mce family protein | D3C88_15710 | Not Available | Positive | 2174739 - 2176122 | 49646.5 |
| 16s rrna (cytosine(1407)-c(5))-methyltransferase rsmf | D3C88_15715 | Not Available | Positive | 2176202 - 2176686 | 17695.1 |
| cold-shock protein csph | D3C88_15720 | Not Available | Positive | 2176746 - 2176958 | 7720.48 |
| phenylalanine--trna ligase subunit alpha | D3C88_15725 | Not Available | Positive | 2177020 - 2177456 | 16807.3 |
| phenylalanine--trna ligase subunit beta | D3C88_15730 | Not Available | Positive | 2177471 - 2178136 | 23339.1 |
| phosphopantetheine attachment site protein | D3C88_15735 | Not Available | Positive | 2178137 - 2178448 | 11443.7 |
| periplasmic nitrate reductase subunit alpha | D3C88_15740 | Not Available | Positive | 2178449 - 2179710 | 47447.2 |
| type vi secretion system-associated protein tago | D3C88_15745 | Not Available | Positive | 2179711 - 2180158 | 16437.6 |
| non-ribosomal peptide synthetase | D3C88_15750 | Not Available | Positive | 2180159 - 2181149 | 37497.0 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





