Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain S308 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1262456 bp
Thymine Count
1260045 bp
Guanine Count
1272289 bp
Cytosine Count
1272432 bp
Genome Length
5067372 bp
Protein-coding Genes
6432 genes
Non-Coding Genes
145 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-binding protein | D3C88_15290 | Not Available | Negative | 2122005 - 2122337 | 12333.9 |
| thiamine/thiamine pyrophosphate abc transporter permease thip | D3C88_15295 | Not Available | Positive | 2122342 - 2122643 | 11384.2 |
| rhamnulokinase | D3C88_15300 | Not Available | Negative | 2122653 - 2123758 | 40412.8 |
| site-specific integrase | D3C88_15305 | Not Available | Negative | 2123759 - 2124162 | 16480.1 |
| hypothetical protein | D3C88_15310 | Not Available | Positive | 2124211 - 2124469 | 9552.17 |
| hypothetical protein | D3C88_15315 | Not Available | Negative | 2124470 - 2124669 | 6676.5 |
| phage tail protein | D3C88_15320 | Not Available | Positive | 2124800 - 2126542 | 59622.8 |
| tail fiber assembly protein | D3C88_15325 | Not Available | Positive | 2126542 - 2127126 | 21745.3 |
| nucleocapsid protein | D3C88_15330 | Not Available | Positive | 2127099 - 2127236 | 5261.65 |
| nadh-quinone oxidoreductase subunit c/d | D3C88_15340 | Not Available | Negative | 2127629 - 2127862 | 8928.92 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





