Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain S308 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1262456 bp
Thymine Count
1260045 bp
Guanine Count
1272289 bp
Cytosine Count
1272432 bp
Genome Length
5067372 bp
Protein-coding Genes
6432 genes
Non-Coding Genes
145 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadh-quinone oxidoreductase subunit f | D3C88_14505 | Not Available | Negative | 2037093 - 2037246 | 5698.79 |
| n-acetylmuramoyl-l-alanine amidase | D3C88_14510 | Not Available | Positive | 2037320 - 2038150 | 31096.2 |
| nad(p)-dependent oxidoreductase | D3C88_14515 | Not Available | Negative | 2038147 - 2038382 | 8800.63 |
| hypothetical protein | D3C88_14520 | Not Available | Positive | 2038409 - 2038613 | 7715.96 |
| hypothetical protein | D3C88_14525 | Not Available | Negative | 2038614 - 2039070 | 16029.9 |
| udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligase | D3C88_14530 | Not Available | Negative | 2039071 - 2039342 | 9933.68 |
| serine endoprotease | D3C88_14535 | Not Available | Negative | 2039343 - 2039706 | 12555.9 |
| peptide chain release factor h | D3C88_14540 | Not Available | Negative | 2039707 - 2039929 | 8056.61 |
| rna ligase rtcb family protein | D3C88_14545 | Not Available | Negative | 2039926 - 2040112 | 6609.21 |
| type vi secretion system baseplate subunit tssk | D3C88_14550 | Not Available | Negative | 2040113 - 2040481 | 13335.3 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





