Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain S308 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1262456 bp
Thymine Count
1260045 bp
Guanine Count
1272289 bp
Cytosine Count
1272432 bp
Genome Length
5067372 bp
Protein-coding Genes
6432 genes
Non-Coding Genes
145 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | D3C88_11680 | Not Available | Negative | 1686873 - 1687184 | 12048.4 |
| hypothetical protein | D3C88_11685 | Not Available | Negative | 1687184 - 1687510 | 12578.1 |
| hypothetical protein | D3C88_11690 | Not Available | Negative | 1687507 - 1688157 | 24082.2 |
| lytic transglycosylase domain-containing protein | D3C88_11695 | Not Available | Negative | 1688141 - 1688881 | 27743.3 |
| atp-dependent chaperone clpb | D3C88_11700 | Not Available | Negative | 1689205 - 1691778 | 95618.9 |
| peptidoglycan editing factor pgef | D3C88_11705 | Not Available | Negative | 1691908 - 1692639 | 26355.4 |
| ribosomal large subunit pseudouridine synthase d | D3C88_11710 | Not Available | Negative | 1692636 - 1693616 | 37157.9 |
| outer membrane protein assembly factor bamd | D3C88_11715 | Not Available | Positive | 1693751 - 1693984 | 8753.36 |
| nad-dependent protein deacylase | D3C88_11720 | Not Available | Negative | 1693985 - 1694240 | 9483.15 |
| hypothetical protein | D3C88_11730 | Not Available | Positive | 1694308 - 1694600 | 11002.2 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





