Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain S308 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1262456 bp
Thymine Count
1260045 bp
Guanine Count
1272289 bp
Cytosine Count
1272432 bp
Genome Length
5067372 bp
Protein-coding Genes
6432 genes
Non-Coding Genes
145 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| siroheme synthase | D3C88_04850 | Not Available | Negative | 734718 - 734955 | 8588.5 |
| fmn reductase | D3C88_04855 | Not Available | Negative | 734956 - 735082 | 4279.12 |
| nitroreductase family protein | D3C88_04860 | Not Available | Negative | 735093 - 735683 | 21626.6 |
| pyrimidine utilization protein d | D3C88_04865 | Not Available | Negative | 735693 - 736493 | 28879.8 |
| pyrimidine utilization protein c | D3C88_04870 | Not Available | Negative | 736501 - 736887 | 13763.6 |
| pyrimidine utilization protein b | D3C88_04875 | Not Available | Negative | 736899 - 737075 | 6415.38 |
| l,d-transpeptidase | D3C88_04880 | Not Available | Positive | 737076 - 737484 | 15143.1 |
| hypothetical protein | D3C88_04885 | Not Available | Positive | 737803 - 738201 | 15072.0 |
| colibactin biosynthesis phosphopantetheinyl transferase clba | D3C88_04900 | Not Available | Negative | 739505 - 740239 | 28673.5 |
| colibactin biosynthesis luxr family transcriptional regulator clbr | D3C88_04905 | Not Available | Negative | 740240 - 740452 | 8259.03 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





