Vibrio cholerae strain CHNf1

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio cholerae strain CHNf1 is a Gram-negative, rod-shaped bacterium recognized for its pathogenicity in humans. It exhibits a facultative anaerobic metabolism, primarily functioning as a heterotroph. This strain possesses flagella, which may facilitate its motility, although it is noted to be non-motile in behavior. With an optimal growth temperature of 20°C, it thrives in mesophilic conditions. The bacterium is free-living and is found in various habitats, including aquatic environments where it can interact with multiple hosts such as Homo sapiens, Mollusca, Mammalia, and the shrimp species Penaeus vannamei. CHNf1 can be associated with a wide range of health issues, including cholera, pneumonia, gastrointestinal infections, and various soft tissue infections. Notably, it is linked to severe conditions such as septicemia, necrotizing fasciitis, and clinical cholera, which can contribute to outbreaks of diarrheal disease. Given its pathogenic nature, V. cholerae strain CHNf1 serves as a significant concern in public health, particularly in regions susceptible to cholera outbreaks. The strain's ability to thrive in aquatic environments and its multiple biotic relationships underscore its ecological adaptability and potential for transmission, highlighting the importance of monitoring environments where it may proliferate, especially in the context of human exposure.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio cholerae
Strainstrain CHNf1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Vibrio cholerae strain CHNf1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature20
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens, Mollusca, Mammalia
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityHuman

Genome Summary

Vibrio cholerae strain CHNf1 Scaffold149, whole genome shotgun

Gene Summary

Adenine Count

1053789 bp

Thymine Count

1042475 bp

Guanine Count

934263 bp

Cytosine Count

953469 bp

Genome Length

3984061 bp

Protein-coding Genes

3529 genes

Non-Coding Genes

118 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
formyltetrahydrofolate deformylaseD2B32_03180Not AvailablePositive682664 - 68349731374.7
nadph-dependent 2,4-dienoyl-coa reductaseD2B32_03185Not AvailableNegative683571 - 68557173271.2
signal peptide peptidase sppaD2B32_03190Not AvailablePositive685801 - 68765167089.2
l-asparaginase 1D2B32_03195Not AvailablePositive687768 - 68878136709.4
duf1315 family proteinD2B32_03200Not AvailableNegative688879 - 68916610726.7
duf2989 domain-containing proteinD2B32_03205Not AvailablePositive689270 - 69009431208.4
peptide-methionine (r)-s-oxide reductaseD2B32_03210Not AvailableNegative690255 - 69069816862.8
type i glyceraldehyde-3-phosphate dehydrogenaseD2B32_03215Not AvailablePositive690998 - 69199335285.1
d-hexose-6-phosphate mutarotaseD2B32_03220Not AvailablePositive692141 - 69303132723.7
hypothetical proteinD2B32_03225Not AvailableNegative692999 - 6931876820.4

Displaying genes 661 – 670 of 3647 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
CholeraCausesPMC10103850
Ear infectionsCausesPMC10103850
Wound infectionsCausesPMC10103850
SepticaemiaCausesPMC10103850
Gastrointestinal infectionsCausesPMC10103850
Necrotizing fasciitisCausesPMC10103850
VibriosisCausesPMC10472736
PneumoniaCausesPMC12801787
GastroenteritisCausesPMC12801787
SinusitisCausesPMC12801787

Displaying health effects 1 – 10 of 38 in total