Vibrio cholerae strain CHNf1

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio cholerae strain CHNf1 is a Gram-negative, rod-shaped bacterium recognized for its pathogenicity in humans. It exhibits a facultative anaerobic metabolism, primarily functioning as a heterotroph. This strain possesses flagella, which may facilitate its motility, although it is noted to be non-motile in behavior. With an optimal growth temperature of 20°C, it thrives in mesophilic conditions. The bacterium is free-living and is found in various habitats, including aquatic environments where it can interact with multiple hosts such as Homo sapiens, Mollusca, Mammalia, and the shrimp species Penaeus vannamei. CHNf1 can be associated with a wide range of health issues, including cholera, pneumonia, gastrointestinal infections, and various soft tissue infections. Notably, it is linked to severe conditions such as septicemia, necrotizing fasciitis, and clinical cholera, which can contribute to outbreaks of diarrheal disease. Given its pathogenic nature, V. cholerae strain CHNf1 serves as a significant concern in public health, particularly in regions susceptible to cholera outbreaks. The strain's ability to thrive in aquatic environments and its multiple biotic relationships underscore its ecological adaptability and potential for transmission, highlighting the importance of monitoring environments where it may proliferate, especially in the context of human exposure.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio cholerae
Strainstrain CHNf1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Vibrio cholerae strain CHNf1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature20
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens, Mollusca, Mammalia
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityHuman

Genome Summary

Vibrio cholerae strain CHNf1 Scaffold149, whole genome shotgun

Gene Summary

Adenine Count

1053789 bp

Thymine Count

1042475 bp

Guanine Count

934263 bp

Cytosine Count

953469 bp

Genome Length

3984061 bp

Protein-coding Genes

3529 genes

Non-Coding Genes

118 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribonuclease rD2B32_17520Not AvailablePositive3802782 - 380499283169.3
d-alanyl-d-alanine endopeptidaseD2B32_17525Not AvailableNegative3805089 - 380603934699.6
hypothetical proteinD2B32_17530Not AvailableNegative3806516 - 38067528840.36
outer membrane protein ompwD2B32_17535Not AvailablePositive3806993 - 380764623331.2
hemagglutininD2B32_17540Not AvailablePositive3808066 - 380989566012.0
methionine abc transporter substrate-binding protein metqD2B32_17545Not AvailableNegative3810161 - 381097029068.8
abc transporter permeaseD2B32_17550Not AvailableNegative3811007 - 381168423764.1
d-methionine abc transporter, atp-binding proteinD2B32_17555Not AvailableNegative3811674 - 381270837548.5
d-glycero-beta-d-manno-heptose 1,7-bisphosphate 7-phosphataseD2B32_17560Not AvailablePositive3812944 - 381350420829.9
hth-type transcriptional regulator trerD2B32_17565Not AvailablePositive3813569 - 381451934908.9

Displaying genes 3411 – 3420 of 3647 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
CholeraCausesPMC10103850
Ear infectionsCausesPMC10103850
Wound infectionsCausesPMC10103850
SepticaemiaCausesPMC10103850
Gastrointestinal infectionsCausesPMC10103850
Necrotizing fasciitisCausesPMC10103850
VibriosisCausesPMC10472736
PneumoniaCausesPMC12801787
GastroenteritisCausesPMC12801787
SinusitisCausesPMC12801787

Displaying health effects 1 – 10 of 38 in total