Escherichia coli strain PS00209

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain PS00209 is a Gram-negative, rod-shaped bacterium that exhibits mobility due to the presence of flagella. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. It typically exists in pairs or singles and has a mesophilic optimal temperature of 37°C, making it well-suited for growth in the human body and associated hosts. The strain PS00209 is host-associated and has a diverse range of potential hosts, including Homo sapiens, various livestock such as Bos taurus and Sus scrofa, as well as a wide array of other vertebrates and invertebrates, including Acanthamoeba castellanii and Apis mellifera. This broad host range indicates a significant ecological versatility. Pathogenicity is a notable characteristic of strain PS00209, as it is associated with various health effects in humans, including urinary tract infections (UTIs), gastrointestinal infections, and more severe conditions like neonatal meningitis and septicemia. The strain has been implicated in serious health issues such as hemolytic uremic syndrome (HUS) and colibacillosis, which underscores its potential as a significant pathogen in clinical settings. The ecological implications of E. coli strain PS00209 highlight its role in both health and disease. Its ability to inhabit a wide range of hosts suggests that it plays a complex role in microbial ecosystems, possibly contributing to both symbiotic and pathogenic relationships within its environments. Understanding this strain's interactions can provide insights into managing infections and developing better health interventions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain PS00209

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain PS00209
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain PS00209 NODE_261_length_205_cov_26.782051,

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4860 genes

Non-Coding Genes

327 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
thermosensitive gluconokinaseD2F89_05580Not AvailableNegative1131076 - 113163921005.2
l-idonate 5-dehydrogenaseD2F89_05585Not AvailablePositive1131856 - 113288737176.8
gluconate 5-dehydrogenaseD2F89_05590Not AvailablePositive1132911 - 113367527564.3
trap transporter large permease subunitD2F89_05595Not AvailablePositive1133737 - 113505646035.2
transcriptional regulatorD2F89_05600Not AvailablePositive1135123 - 113612137569.5
duf853 domain-containing proteinD2F89_05605Not AvailablePositive1136199 - 113770154201.4
lps export abc transporter permease lptgD2F89_05610Not AvailableNegative1137827 - 113890939621.0
lps export abc transporter permease lptfD2F89_05615Not AvailableNegative1138909 - 114000940360.1
cytosol aminopeptidaseD2F89_05620Not AvailablePositive1140276 - 114178754883.1
dna polymerase iii subunit chiD2F89_05625Not AvailablePositive1142141 - 114258416574.5

Displaying genes 1391 – 1400 of 5187 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total