Shigella boydii strain DMB SH20032

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella boydii strain DMB SH20032 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0 °C, which aligns with the physiological temperature of its host-associated habitat. As a chemoorganotroph, S. boydii strain DMB SH20032 derives energy from organic compounds, allowing it to exploit various nutrient sources available within its host environment. Furthermore, its classification as a facultative anaerobe indicates that it can grow in both aerobic and anaerobic conditions, providing it with metabolic flexibility that may contribute to its adaptability in diverse ecological niches. Understanding the physiological traits of S. boydii strain DMB SH20032 is crucial for elucidating its role within the host environment. The combination of its temperature preference and energy acquisition strategies suggests that it may participate in complex microbial interactions within the gastrointestinal tract of its host, potentially influencing both microbial community structure and host health. This adaptability may also reflect the evolutionary pressures faced by this strain, highlighting its significance in the study of host-associated microbial ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella boydii
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Shigella boydii strain DMB SH20032
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Shigella boydii strain DMB SH20032

Accession NumberQWSV00000000.1

Gene Summary

Adenine Count

1219558 bp

Thymine Count

1220680 bp

Guanine Count

1242061 bp

Cytosine Count

1235334 bp

Genome Length

4917633 bp

Protein-coding Genes

4525 genes

Non-Coding Genes

223 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
C proteinCUA56_02060Not Available-407054 - 40736511088.2
dna-binding proteinCUA56_02065Not Available+407461 - 40773910794.0
Hypothetical proteinCUA56_02070Not Available+407754 - 40809212774.2
Hypothetical proteinCUA56_02075Not Available+408103 - 40839010567.5
Dna modification methyltransferaseCUA56_02080Not Available+408402 - 4086448971.61
Hypothetical proteinCUA56_02085Not Available+408841 - 4090447976.5
Winged helix-turn-helix transcriptional regulatorCUA56_02090Not Available+409041 - 4092869033.98
Hypothetical proteinCUA56_02095Not Available+409428 - 40979313799.6
Replication proteinCUA56_02100Not Available+409938 - 412622101833.0
RecombinaseCUA56_02105Not Available+412699 - 41365834938.7

Displaying genes 11 – 20 of 4748 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites