Shigella boydii strain DMB SH134

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella boydii strain DMB SH134 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, aligning with the physiological temperature of the human body, which suggests it is well-adapted to host-associated environments. As a chemoorganotroph, S. boydii strain DMB SH134 derives its energy from organic compounds, further indicating its reliance on host-derived nutrients for growth and metabolism. Being a facultative anaerobe, this strain is capable of surviving in both aerobic and anaerobic conditions, allowing it to inhabit various niches within the host environment. Its ability to adapt to fluctuating oxygen levels may enhance its survival during infection, potentially contributing to its persistence in host tissues. The ecological implications of S. boydii strain DMB SH134's traits suggest a complex interaction with the host microbiome, where it may compete with or influence other microbial populations. Understanding the metabolic capabilities and environmental adaptability of this strain could provide insights into its role within host-associated ecosystems and its potential interactions with other gut microbiota.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella boydii
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Shigella boydii strain DMB SH134
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Shigella boydii strain DMB SH134

Accession NumberQWSH00000000.1

Gene Summary

Adenine Count

1179951 bp

Thymine Count

1180164 bp

Guanine Count

1201480 bp

Cytosine Count

1210614 bp

Genome Length

4772209 bp

Protein-coding Genes

4434 genes

Non-Coding Genes

251 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Qin prophageUL57_06185Not Available-1202174 - 120275221171.6
Tail fiber proteinUL57_06190Not Available-1202761 - 120326518541.6
Putative positive regulator of late gene transcriptionUL57_10740Not Available-2080239 - 20804939656.61
Tail proteinUL57_10745Not Available-2080539 - 208170242713.9
Tail proteinUL57_10750Not Available-2081702 - 208218117411.2
Tail length determinatorUL57_10755Not Available-2082196 - 208464386518.7
Putative phage tail proteinUL57_10760Not Available-2084636 - 20847554560.46
Tail proteinUL57_10765Not Available-2084788 - 20850639637.89
Tail tube proteinUL57_10770Not Available-2085120 - 208563819069.8
Phage tail sheath protein fiUL57_10775Not Available-2085651 - 208684143035.9

Displaying genes 11 – 20 of 4685 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites