Desulfotomaculum sp. OF05-3

rod

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Desulfotomaculaceae

Genus

Desulfotomaculum

Description

Desulfotomaculum sp. OF05-3 is a Gram-positive, rod-shaped bacterium. This organism is characterized by having a single replicon, which is significant for its genetic structure and replication processes. The accession number for Desulfotomaculum sp. OF05-3 is QWGO00000000.1, which provides a reference point for genetic and genomic studies related to this species. As a member of the Desulfotomaculum genus, this bacterium is likely involved in sulfate reduction, a critical process in various biogeochemical cycles. This trait suggests that Desulfotomaculum sp. OF05-3 may play a role in the mineralization of organic matter and the cycling of sulfur in its environment, contributing to the overall ecological dynamics. The Gram-positive nature of the bacterium may also influence its interactions within microbial communities, particularly in anaerobic conditions where sulfate-reducing bacteria often thrive. Understanding the traits of Desulfotomaculum sp. OF05-3 can provide insight into its ecological role, particularly in environments where sulfate is available, such as sediments and anaerobic habitats. The bacterium's ability to reduce sulfate can impact nutrient cycling, which is crucial for maintaining ecosystem health and function.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyDesulfotomaculaceae
GenusDesulfotomaculum
SpeciesDesulfotomaculum sp. OF05-3
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-positive
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Desulfotomaculum sp. OF05-3 OF05-3.Scaf92, whole genome shotgun

Gene Summary

Adenine Count

978776 bp

Thymine Count

958240 bp

Guanine Count

901609 bp

Cytosine Count

881571 bp

Genome Length

3720446 bp

Protein-coding Genes

3309 genes

Non-Coding Genes

104 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Ncrna_class:srp_rnaNot AvailableNot AvailablePositive15539 - 15800Not Available
translational gtpase typaDXA87_00080Not AvailableNegative13969 - 1581068479.5
yigz family proteinDXA87_00085Not AvailableNegative16158 - 1681123715.5
penicillin-binding proteinDXA87_00090Not AvailablePositive17115 - 1980898194.7
electron transfer flavoprotein subunit alpha/fixb family proteinDXA87_00095Not AvailableNegative20187 - 2115533531.1
electron transfer flavoprotein subunit beta/fixa family proteinDXA87_00100Not AvailableNegative21240 - 2201627244.6
acyl-coa dehydrogenaseDXA87_00105Not AvailableNegative22154 - 2329040632.6
fad-binding oxidoreductaseDXA87_00110Not AvailableNegative23499 - 2493552018.6
fadr family transcriptional regulatorDXA87_00115Not AvailableNegative25351 - 2601925710.9
bifunctional phosphoserine phosphatase/homoserine phosphotransferase thrhDXA87_00120Not AvailableNegative26261 - 2686622845.7

Displaying genes 81 – 90 of 3413 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

30 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000491D-erythruloseC4H8O4Chemical structure of D-erythruloseNot available
Average120.104Da
Monoisotopic120.0422587Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0001341chloroacetateC2H2ClO2Chemical structure of chloroacetateNot available
Average93.49Da
Monoisotopic92.9748806Da
BASm0001364p-cumateC10H11O2Chemical structure of p-cumateNot available
Average163.197Da
Monoisotopic163.076453174Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001861(2R,3S)-3-phenylcyclohexa-3,5-diene-1,2-diolC12H12O2Chemical structure of (2R,3S)-3-phenylcyclohexa-3,5-diene-1,2-diolNot available
Average188.226Da
Monoisotopic188.0837296Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002002glyoxylateC2HO3Chemical structure of glyoxylateNot available
Average73.0275Da
Monoisotopic72.9925689Da
BASm0002131(3S)-hydroxy-3-methylglutaryl-CoAC27H39N7O20P3SChemical structure of (3S)-hydroxy-3-methylglutaryl-CoANot available
Average906.62Da
Monoisotopic906.1183419Da
BASm00026073-methyl-(2E)-butenoyl-CoAC26H38N7O17P3SChemical structure of 3-methyl-(2E)-butenoyl-CoANot available
Average845.61Da
Monoisotopic845.1279693Da

Displaying 1–10 of 30 metabolites

Health Effects

No health effects information available for this bacterium.