Pseudotabrizicola alkalilacus strain DJC

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Pseudotabrizicola

Description

Pseudotabrizicola alkalilacus strain DJC is characterized by possessing a single replicon. This trait is significant as it suggests a streamlined genomic organization, which can impact the organism's metabolic capabilities and adaptability to various environments. The strain's genome is accessible under the accession number QWEY00000000.1, providing a resource for further genomic analysis and research. The characteristics of Pseudotabrizicola alkalilacus strain DJC position it within a unique ecological niche, likely adapting to alkaline conditions given its specific designation in the genus Pseudotabrizicola. This adaptation may influence its interactions within microbial communities and its potential roles in biogeochemical cycles, particularly in alkaline environments. Such environments can include alkaline lakes or soils, where specialized microbial life forms thrive. In summary, the genomic structure of Pseudotabrizicola alkalilacus strain DJC, defined by its single replicon and documented genomic data, suggests a specialization that may enhance its survival and functionality in alkaline ecosystems. Further research into its metabolic pathways and ecological interactions could provide valuable insights into microbial life in extreme environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusPseudotabrizicola
SpeciesPseudotabrizicola alkalilacus
Strainstrain DJC

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudotabrizicola alkalilacus strain DJC DJC_scaffold110, whole

Gene Summary

Adenine Count

856332 bp

Thymine Count

855859 bp

Guanine Count

1442116 bp

Cytosine Count

1455754 bp

Genome Length

4610061 bp

Protein-coding Genes

4266 genes

Non-Coding Genes

124 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protoporphyrinogen oxidase hemjD1012_17430Not AvailablePositive3597242 - 359769117060.3
transcription termination factor rhoD1012_17435Not AvailablePositive3597814 - 359908547255.0
trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnmeD1012_17440Not AvailablePositive3599104 - 360039045793.9
trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmgD1012_17445Not AvailablePositive3600394 - 360226867869.6
16s rrna (guanine(527)-n(7))-methyltransferase rsmgD1012_17450Not AvailablePositive3602268 - 360289123037.6
para family proteinD1012_17455Not AvailablePositive3602884 - 360369628953.7
parb/repb/spo0j family partition proteinD1012_17460Not AvailablePositive3603713 - 360462433309.2
coproporphyrinogen iii oxidaseD1012_17465Not AvailableNegative3604634 - 360578842796.9
rdgb/ham1 family non-canonical purine ntp pyrophosphataseD1012_17470Not AvailableNegative3605836 - 360644421787.8
ribonuclease phD1012_17475Not AvailableNegative3606441 - 360715425274.4

Displaying genes 3471 – 3480 of 4390 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.