Pseudotabrizicola alkalilacus strain DJC

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Pseudotabrizicola

Description

Pseudotabrizicola alkalilacus strain DJC is characterized by possessing a single replicon. This trait is significant as it suggests a streamlined genomic organization, which can impact the organism's metabolic capabilities and adaptability to various environments. The strain's genome is accessible under the accession number QWEY00000000.1, providing a resource for further genomic analysis and research. The characteristics of Pseudotabrizicola alkalilacus strain DJC position it within a unique ecological niche, likely adapting to alkaline conditions given its specific designation in the genus Pseudotabrizicola. This adaptation may influence its interactions within microbial communities and its potential roles in biogeochemical cycles, particularly in alkaline environments. Such environments can include alkaline lakes or soils, where specialized microbial life forms thrive. In summary, the genomic structure of Pseudotabrizicola alkalilacus strain DJC, defined by its single replicon and documented genomic data, suggests a specialization that may enhance its survival and functionality in alkaline ecosystems. Further research into its metabolic pathways and ecological interactions could provide valuable insights into microbial life in extreme environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusPseudotabrizicola
SpeciesPseudotabrizicola alkalilacus
Strainstrain DJC

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudotabrizicola alkalilacus strain DJC DJC_scaffold110, whole

Gene Summary

Adenine Count

856332 bp

Thymine Count

855859 bp

Guanine Count

1442116 bp

Cytosine Count

1455754 bp

Genome Length

4610061 bp

Protein-coding Genes

4266 genes

Non-Coding Genes

124 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
efflux rnd transporter periplasmic adaptor subunitD1012_07635Not AvailablePositive1552926 - 155405939495.1
efflux rnd transporter permease subunitD1012_07640Not AvailablePositive1554056 - 1557568124612.0
abc transporter atp-binding protein/permeaseD1012_07645Not AvailableNegative1557592 - 155940665836.0
lysm peptidoglycan-binding domain-containing proteinD1012_07650Not AvailableNegative1559467 - 156057336860.0
tigr00730 family rossman fold proteinD1012_07655Not AvailablePositive1561236 - 156179019848.3
hypothetical proteinD1012_07660Not AvailableNegative1561819 - 156224415407.9
superoxide dismutaseD1012_07665Not AvailableNegative1562402 - 156300121913.7
phosphoribosyl-amp cyclohydrolaseD1012_07670Not AvailableNegative1563096 - 156346713672.2
iron-sulfur cluster assembly scaffold proteinD1012_07675Not AvailablePositive1563531 - 156398015445.7
atp-dependent dna helicase recgD1012_07680Not AvailableNegative1564322 - 156640674754.0

Displaying genes 1581 – 1590 of 4390 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.