Pseudotabrizicola alkalilacus strain DJC

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Pseudotabrizicola

Description

Pseudotabrizicola alkalilacus strain DJC is characterized by possessing a single replicon. This trait is significant as it suggests a streamlined genomic organization, which can impact the organism's metabolic capabilities and adaptability to various environments. The strain's genome is accessible under the accession number QWEY00000000.1, providing a resource for further genomic analysis and research. The characteristics of Pseudotabrizicola alkalilacus strain DJC position it within a unique ecological niche, likely adapting to alkaline conditions given its specific designation in the genus Pseudotabrizicola. This adaptation may influence its interactions within microbial communities and its potential roles in biogeochemical cycles, particularly in alkaline environments. Such environments can include alkaline lakes or soils, where specialized microbial life forms thrive. In summary, the genomic structure of Pseudotabrizicola alkalilacus strain DJC, defined by its single replicon and documented genomic data, suggests a specialization that may enhance its survival and functionality in alkaline ecosystems. Further research into its metabolic pathways and ecological interactions could provide valuable insights into microbial life in extreme environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusPseudotabrizicola
SpeciesPseudotabrizicola alkalilacus
Strainstrain DJC

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudotabrizicola alkalilacus strain DJC DJC_scaffold110, whole

Gene Summary

Adenine Count

856332 bp

Thymine Count

855859 bp

Guanine Count

1442116 bp

Cytosine Count

1455754 bp

Genome Length

4610061 bp

Protein-coding Genes

4266 genes

Non-Coding Genes

124 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-isopropylmalate dehydratase small subunitD1012_04900Not AvailableNegative997063 - 99766822083.4
3-isopropylmalate dehydratase large subunitD1012_04905Not AvailableNegative997814 - 99923550677.6
ribosome silencing factorD1012_04910Not AvailablePositive999572 - 100000615660.6
23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmhD1012_04915Not AvailablePositive1000012 - 100048216914.5
protein phosphataseD1012_04920Not AvailableNegative1000539 - 100101816689.2
dna polymerase iii subunit gamma/tauD1012_04925Not AvailablePositive1001091 - 100284562573.6
ybab/ebfc family nucleoid-associated proteinD1012_04930Not AvailablePositive1002858 - 100320212003.8
recombination protein recrD1012_04935Not AvailablePositive1003206 - 100380520992.5
lyttr family transcriptional regulatorD1012_04940Not AvailablePositive1003965 - 100497236397.1
duf1013 domain-containing proteinD1012_04945Not AvailableNegative1004988 - 100573427527.4

Displaying genes 1081 – 1090 of 4390 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.