Clavibacter nebraskensis strain CFBP 7577 CFBP75771273

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Clavibacter

Description

Clavibacter nebraskensis strain CFBP 7577 (CFBP75771273) is a Gram-positive, rod-shaped bacterium known for its pathogenicity in maize (Zea mays subsp. mays and Zea mays). It possesses flagella, which facilitate motility, allowing it to navigate through its environment effectively. This strain has a single replicon, indicating a relatively simple genomic organization. The primary health effects associated with C. nebraskensis include various forms of Goss's bacterial wilt and blight of maize, which are significant diseases affecting corn crops. These include manifestations referred to as Goss's wilt, Goss's blight of corn, and Gross's wilt of maize. The presence of these diseases can lead to substantial agricultural losses, impacting both crop yield and economic stability for farmers. The strain is catalogued under the accession QWED00000000.1, which provides a reference for further research and characterization. The interaction between this bacterium and its host, Zea mays, highlights the ecological dynamics within agricultural systems, particularly in how pathogens can influence plant health and productivity. Understanding the specific traits and effects of Clavibacter nebraskensis is crucial for developing effective management strategies to mitigate its impact on maize crops, thereby supporting sustainable agricultural practices.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusClavibacter
SpeciesClavibacter nebraskensis
Strainstrain CFBP 7577 CFBP75771273

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Clavibacter nebraskensis strain CFBP 7577 CFBP75771273
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Zea mays subsp. mays, Zea mays
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clavibacter nebraskensis strain CFBP 7577 CFBP75771273, whole

Gene Summary

Adenine Count

407143 bp

Thymine Count

405656 bp

Guanine Count

1082169 bp

Cytosine Count

1087568 bp

Genome Length

2982539 bp

Protein-coding Genes

3293 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinDZF97_00005Not AvailablePositive1 - 59420476.3
5s ribosomal rnaNot AvailableNot AvailablePositive312 - 428Not Available
Ncrna_class:srp_rnaNot AvailableNot AvailablePositive2128 - 2224Not Available
murein biosynthesis integral membrane protein murjDZF97_00020Not AvailablePositive3207 - 483856595.4
Ncrna_class:rnase_p_rnaNot AvailableNot AvailablePositive3742 - 4123Not Available
thioredoxin-disulfide reductaseDZF97_00025Not AvailablePositive4995 - 603236244.7
thioredoxinDZF97_00030Not AvailablePositive6114 - 643711747.2
plp-dependent aminotransferase family proteinDZF97_00035Not AvailablePositive6583 - 790548050.4
d-alanine--d-alanine ligaseDZF97_00040Not AvailablePositive7949 - 891433360.7
parb/repb/spo0j family partition proteinDZF97_00045Not AvailableNegative8982 - 998336028.7

Displaying genes 1 – 10 of 3341 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Goss ??s bacterial wilt and blight of maizeCausesPMC5880354
Goss s bacterial wilt and blight of maizeCausesPMC5880354
Goss s wiltCausesPMC5880354
Goss's wilt/blight of cornCausesPMC6622472
Goss s bacterial wiltCausesPMC6622472
Blight of cornCausesPMC6622472
Goss s bacterial wilt and blight of cornCausesPMC6622472
Gross's wilt of maizeCausesPMC9190982

Displaying health effects 1 – 8 of 8 in total