Clavibacter michiganensis subsp. insidiosus strain CFBP 6488

Gram-positiveRodNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Clavibacter

Description

Clavibacter michiganensis subsp. insidiosus strain CFBP 6488 is a Gram-positive, rod-shaped bacterium that exhibits a unique cell arrangement, typically found in pairs or singles. This strain is an aerobe, requiring oxygen for growth, and it thrives optimally at a temperature of 25°C, categorizing it as mesophilic. The bacterium is non-motile, lacking flagella, and possesses a single membrane and a single replicon, which is characteristic of its cellular structure. It is classified as free-living, indicating it does not rely on a host for survival under natural conditions. However, it has been noted to have a biotic relationship with Medicago sativa, commonly known as alfalfa, suggesting that it may play a role in the plant's microbiome or influence its health. The strain is cataloged under the accession number QWEA00000000.1, which is essential for tracking and referencing in scientific studies. The ecological insight from the presence of Clavibacter michiganensis subsp. insidiosus strain CFBP 6488 in various habitats indicates its adaptability and potential significance in agricultural ecosystems, particularly in relation to its interactions with Medicago sativa. Understanding this bacterium's traits and relationships can inform strategies for crop management and the development of sustainable agricultural practices.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusClavibacter
SpeciesClavibacter michiganensis
Strainsubsp. insidiosus strain CFBP 6488

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Clavibacter michiganensis subsp. insidiosus strain CFBP 6488
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Medicago sativa
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clavibacter michiganensis subsp. insidiosus strain CFBP 6488

Gene Summary

Adenine Count

448911 bp

Thymine Count

446878 bp

Guanine Count

1163632 bp

Cytosine Count

1166114 bp

Genome Length

3225538 bp

Protein-coding Genes

3890 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
adenosylhomocysteinaseDZF93_11120Not AvailablePositive2018669 - 202015353784.8
orotidine 5'-phosphate decarboxylaseDZF93_11125Not AvailablePositive2020287 - 20205247850.49
guanylate kinaseDZF93_11130Not AvailablePositive2020521 - 202142933161.7
dna-directed rna polymerase subunit omegaDZF93_11135Not AvailablePositive2021478 - 20217479769.58
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase coabcDZF93_11140Not AvailablePositive2021826 - 202246021776.5
duf1565 domain-containing proteinDZF93_11145Not AvailableNegative2022872 - 202462360470.1
abc transporter atp-binding proteinDZF93_11150Not AvailableNegative2024681 - 202648965201.1
abc transporter atp-binding proteinDZF93_11155Not AvailableNegative2026486 - 202678610490.6
acyl-coa dehydrogenaseDZF93_11160Not AvailableNegative2026787 - 20270118127.66
voc family proteinDZF93_11165Not AvailableNegative2027053 - 202790429869.9

Displaying genes 2071 – 2080 of 3940 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.