Clavibacter michiganensis subsp. insidiosus strain CFBP 6488

Gram-positiveRodNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Clavibacter

Description

Clavibacter michiganensis subsp. insidiosus strain CFBP 6488 is a Gram-positive, rod-shaped bacterium that exhibits a unique cell arrangement, typically found in pairs or singles. This strain is an aerobe, requiring oxygen for growth, and it thrives optimally at a temperature of 25°C, categorizing it as mesophilic. The bacterium is non-motile, lacking flagella, and possesses a single membrane and a single replicon, which is characteristic of its cellular structure. It is classified as free-living, indicating it does not rely on a host for survival under natural conditions. However, it has been noted to have a biotic relationship with Medicago sativa, commonly known as alfalfa, suggesting that it may play a role in the plant's microbiome or influence its health. The strain is cataloged under the accession number QWEA00000000.1, which is essential for tracking and referencing in scientific studies. The ecological insight from the presence of Clavibacter michiganensis subsp. insidiosus strain CFBP 6488 in various habitats indicates its adaptability and potential significance in agricultural ecosystems, particularly in relation to its interactions with Medicago sativa. Understanding this bacterium's traits and relationships can inform strategies for crop management and the development of sustainable agricultural practices.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusClavibacter
SpeciesClavibacter michiganensis
Strainsubsp. insidiosus strain CFBP 6488

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Clavibacter michiganensis subsp. insidiosus strain CFBP 6488
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Medicago sativa
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clavibacter michiganensis subsp. insidiosus strain CFBP 6488

Gene Summary

Adenine Count

448911 bp

Thymine Count

446878 bp

Guanine Count

1163632 bp

Cytosine Count

1166114 bp

Genome Length

3225538 bp

Protein-coding Genes

3890 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ornithine--oxo-acid transaminaseDZF93_08770Not AvailablePositive1624934 - 162593734826.4
glycosyltransferaseDZF93_08775Not AvailableNegative1625938 - 162719144587.6
rok family proteinDZF93_08790Not AvailableNegative1628176 - 162889324339.1
transcription termination/antitermination protein nusgDZF93_08795Not AvailablePositive1629024 - 163005837495.0
50s ribosomal protein l11DZF93_08800Not AvailablePositive1630112 - 163054315046.4
50s ribosomal protein l1DZF93_08805Not AvailablePositive1630644 - 163133023732.5
n-acetyltransferaseDZF93_08810Not AvailablePositive1631435 - 163184314020.0
two-component sensor histidine kinaseDZF93_08815Not AvailableNegative1631844 - 163286836662.0
phosphate transport system regulatory protein phouDZF93_08820Not AvailablePositive1633073 - 163372624419.9
phosphoglyceromutaseDZF93_08825Not AvailableNegative1633827 - 163458227675.5

Displaying genes 1641 – 1650 of 3940 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.