Clavibacter michiganensis subsp. insidiosus strain CFBP 6488

Gram-positiveRodNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Clavibacter

Description

Clavibacter michiganensis subsp. insidiosus strain CFBP 6488 is a Gram-positive, rod-shaped bacterium that exhibits a unique cell arrangement, typically found in pairs or singles. This strain is an aerobe, requiring oxygen for growth, and it thrives optimally at a temperature of 25°C, categorizing it as mesophilic. The bacterium is non-motile, lacking flagella, and possesses a single membrane and a single replicon, which is characteristic of its cellular structure. It is classified as free-living, indicating it does not rely on a host for survival under natural conditions. However, it has been noted to have a biotic relationship with Medicago sativa, commonly known as alfalfa, suggesting that it may play a role in the plant's microbiome or influence its health. The strain is cataloged under the accession number QWEA00000000.1, which is essential for tracking and referencing in scientific studies. The ecological insight from the presence of Clavibacter michiganensis subsp. insidiosus strain CFBP 6488 in various habitats indicates its adaptability and potential significance in agricultural ecosystems, particularly in relation to its interactions with Medicago sativa. Understanding this bacterium's traits and relationships can inform strategies for crop management and the development of sustainable agricultural practices.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusClavibacter
SpeciesClavibacter michiganensis
Strainsubsp. insidiosus strain CFBP 6488

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Clavibacter michiganensis subsp. insidiosus strain CFBP 6488
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Medicago sativa
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clavibacter michiganensis subsp. insidiosus strain CFBP 6488

Gene Summary

Adenine Count

448911 bp

Thymine Count

446878 bp

Guanine Count

1163632 bp

Cytosine Count

1166114 bp

Genome Length

3225538 bp

Protein-coding Genes

3890 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cobalamin biosynthesis protein cobwDZF93_07090Not AvailablePositive1346057 - 13461984392.24
alpha-ketoglutarate-dependent dioxygenase alkbDZF93_07100Not AvailableNegative1346805 - 134743723011.5
hypothetical proteinDZF93_07105Not AvailableNegative1347501 - 134818124161.0
lipoate--protein ligase family proteinDZF93_07110Not AvailablePositive1348260 - 134930938018.1
bifunctional riboflavin kinase/fad synthetaseDZF93_07115Not AvailableNegative1349694 - 135031021823.4
hypothetical proteinDZF93_07120Not AvailableNegative1350313 - 135077416717.6
hypothetical proteinDZF93_07125Not AvailableNegative1350813 - 135118112797.3
trna pseudouridine(55) synthase trubDZF93_07130Not AvailableNegative1351178 - 135212833489.8
2-dehydropantoate 2-reductaseDZF93_07135Not AvailablePositive1352215 - 135318533264.8
atp-dependent serine peptidase containing a pdz domain proteinDZF93_07140Not AvailablePositive1353186 - 135373618466.6

Displaying genes 1331 – 1340 of 3940 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.