Hydrogenophaga borbori strain LA-38

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Hydrogenophaga

Description

Hydrogenophaga borbori strain LA-38 is a Gram-negative bacterium characterized by its rod-shaped morphology. This strain possesses a single replicon, indicating a streamlined genomic structure. The accession number for this strain is QVLS00000000.1, which provides a reference for researchers interested in its genetic and functional attributes. The classification of Hydrogenophaga borbori within the broader context of microbial ecology highlights its potential roles in various environments. Gram-negative bacteria, such as this strain, are known for their diverse metabolic capabilities and can inhabit a range of ecological niches. The presence of a single replicon suggests a potential for efficient replication and adaptation in its environment, which could be advantageous in competitive microbial communities. Overall, the traits of Hydrogenophaga borbori strain LA-38 indicate it is a well-adapted organism, likely contributing to biogeochemical cycles, particularly in environments where hydrogen and other electron donors are present. Its specific metabolic pathways and ecological interactions would be areas of further study to uncover its role in microbial dynamics and environmental processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusHydrogenophaga
SpeciesHydrogenophaga borbori
Strainstrain LA-38

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hydrogenophaga borbori strain LA-38 contig_37, whole genome

Gene Summary

Adenine Count

681465 bp

Thymine Count

690736 bp

Guanine Count

1613629 bp

Cytosine Count

1597204 bp

Genome Length

4583034 bp

Protein-coding Genes

4200 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
class i sam-dependent methyltransferaseDY262_02775Not AvailableNegative589996 - 59093734398.8
class i sam-dependent methyltransferaseDY262_02780Not AvailableNegative591002 - 59167625104.8
gfo/idh/moca family oxidoreductaseDY262_02785Not AvailableNegative591714 - 59268235338.3
protocatechuate 3,4-dioxygenaseDY262_02790Not AvailableNegative592683 - 59353731111.2
protocatechuate 4,5-dioxygenase subunit alphaDY262_02795Not AvailableNegative593539 - 59398216722.8
2-pyrone-4,6-dicarboxylate hydrolaseDY262_02800Not AvailableNegative593984 - 59491634896.6
4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylaseDY262_02805Not AvailableNegative594926 - 59560923951.2
amidohydrolaseDY262_02810Not AvailableNegative595674 - 59670838531.3
abc transporter substrate-binding proteinDY262_02815Not AvailableNegative596750 - 59743623010.9
lysr family transcriptional regulatorDY262_02820Not AvailablePositive597560 - 59846532625.9

Displaying genes 561 – 570 of 4254 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.