Xanthomonas campestris pv. campestris strain WHRI8960

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas campestris pv. campestris strain WHRI8960 is a Gram-negative, rod-shaped bacterium that exhibits aerobic characteristics and possesses flagella, allowing for mobility. This strain thrives optimally at a temperature of 25°C and falls within the mesophilic temperature range. It has a single replicon and is characterized by having two membranes, which is typical of Gram-negative bacteria. This bacterium is free-living and primarily associated with various host plants, particularly within the Viridiplantae kingdom. Notable hosts include Brassica oleracea var. capitata (cabbage), Arabidopsis, Raphanus sativus (radish), and several other species of the Brassicaceae family. Its pathogenicity is significant, as it is known to cause several diseases, including black rot of cabbage, black rot, bacterial spot disease, and black-rot disease of cruciferous crops. The ecological implications of Xanthomonas campestris pv. campestris strain WHRI8960 are substantial, especially in agricultural contexts. The bacteria's association with economically important crops like cabbage and radish highlights its potential impact on crop yields and food security. Understanding the traits of this strain can aid in developing management strategies for the diseases it causes, thereby contributing to sustainable agricultural practices and the maintenance of healthy ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas campestris
Strainpv. campestris strain WHRI8960

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Xanthomonas campestris pv. campestris strain WHRI8960
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Viridiplantae, Brassica oleracea var. capitata, Arabidopsis
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas campestris pv. campestris strain WHRI8960

Gene Summary

Adenine Count

863808 bp

Thymine Count

855945 bp

Guanine Count

1607689 bp

Cytosine Count

1615702 bp

Genome Length

4943363 bp

Protein-coding Genes

4114 genes

Non-Coding Genes

182 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glutathione peroxidaseD0A42_10355Not AvailablePositive2292175 - 229273220211.4
fkbp-type peptidyl-prolyl cis-trans isomeraseD0A42_10360Not AvailablePositive2292893 - 229378631228.2
udp-glucose/gdp-mannose dehydrogenase family proteinD0A42_10365Not AvailablePositive2293811 - 229515748717.9
protein slyxD0A42_10370Not AvailablePositive2295150 - 22953868821.34
duf2058 family proteinD0A42_10375Not AvailablePositive2295387 - 229608225190.0
transporterD0A42_10380Not AvailablePositive2296336 - 229717229590.3
laci family dna-binding transcriptional regulatorD0A42_10385Not AvailablePositive2297486 - 229852636507.4
l-fucose:h+ symporter permeaseD0A42_10390Not AvailablePositive2298540 - 229985046496.8
carbohydrate kinaseD0A42_10395Not AvailablePositive2299775 - 230083337133.5
age family epimerase/isomeraseD0A42_10400Not AvailablePositive2300830 - 230203546535.2

Displaying genes 2091 – 2100 of 4296 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Black rot of cabbageCausesPMC8042644
Black rotCausesPMC8042644
Black rotCausesPMC13117714
Bacterial spot diseaseCausesPMC8465007
Black rotCausesPMC10335992
Black-rot disease of cruciferous cropsCausesPMC5488342
Black-rot diseaseCausesPMC5488342

Displaying health effects 1 – 7 of 7 in total