Xanthomonas campestris pv. campestris strain WHRI8960

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas campestris pv. campestris strain WHRI8960 is a Gram-negative, rod-shaped bacterium that exhibits aerobic characteristics and possesses flagella, allowing for mobility. This strain thrives optimally at a temperature of 25°C and falls within the mesophilic temperature range. It has a single replicon and is characterized by having two membranes, which is typical of Gram-negative bacteria. This bacterium is free-living and primarily associated with various host plants, particularly within the Viridiplantae kingdom. Notable hosts include Brassica oleracea var. capitata (cabbage), Arabidopsis, Raphanus sativus (radish), and several other species of the Brassicaceae family. Its pathogenicity is significant, as it is known to cause several diseases, including black rot of cabbage, black rot, bacterial spot disease, and black-rot disease of cruciferous crops. The ecological implications of Xanthomonas campestris pv. campestris strain WHRI8960 are substantial, especially in agricultural contexts. The bacteria's association with economically important crops like cabbage and radish highlights its potential impact on crop yields and food security. Understanding the traits of this strain can aid in developing management strategies for the diseases it causes, thereby contributing to sustainable agricultural practices and the maintenance of healthy ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas campestris
Strainpv. campestris strain WHRI8960

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Xanthomonas campestris pv. campestris strain WHRI8960
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Viridiplantae, Brassica oleracea var. capitata, Arabidopsis
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas campestris pv. campestris strain WHRI8960

Gene Summary

Adenine Count

863808 bp

Thymine Count

855945 bp

Guanine Count

1607689 bp

Cytosine Count

1615702 bp

Genome Length

4943363 bp

Protein-coding Genes

4114 genes

Non-Coding Genes

182 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
30s ribosomal protein s2D0A42_07665Not AvailablePositive1669664 - 167049130170.2
elongation factor tsD0A42_07670Not AvailablePositive1670662 - 167154030979.2
ggdef domain-containing proteinD0A42_07675Not AvailablePositive1671825 - 167334856103.2
ump kinaseD0A42_07680Not AvailablePositive1673456 - 167417825753.4
ribosome-recycling factorD0A42_07685Not AvailablePositive1674415 - 167497220450.6
di-trans,poly-cis-decaprenylcistransferaseD0A42_07690Not AvailablePositive1674975 - 167575128478.0
phosphatidate cytidylyltransferaseD0A42_07695Not AvailablePositive1675748 - 167657528999.6
1-deoxy-d-xylulose-5-phosphate reductoisomeraseD0A42_07700Not AvailablePositive1676578 - 167776841118.4
rip metalloprotease rsepD0A42_07705Not AvailablePositive1677795 - 167914148165.9
outer membrane protein assembly factor bamaD0A42_07710Not AvailablePositive1679138 - 168159490704.4

Displaying genes 1581 – 1590 of 4296 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Black rot of cabbageCausesPMC8042644
Black rotCausesPMC8042644
Black rotCausesPMC13117714
Bacterial spot diseaseCausesPMC8465007
Black rotCausesPMC10335992
Black-rot disease of cruciferous cropsCausesPMC5488342
Black-rot diseaseCausesPMC5488342

Displaying health effects 1 – 7 of 7 in total