Clostridium sp. AM42-4

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Clostridium

Description

Clostridium sp. AM42-4 is characterized by possessing a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability and efficiency in various environments. The genomic data for this organism is accessible under the accession number QUIK00000000.1, which facilitates further research and exploration of its genetic makeup. As a member of the genus Clostridium, this organism likely exhibits traits common to other species within this group, such as anaerobic metabolism and the ability to produce spores. These traits are significant as they enable Clostridium species to thrive in oxygen-deprived environments, which are typical in soils, sediments, and the gastrointestinal tracts of animals. The ecological insight regarding Clostridium sp. AM42-4 relates to its potential role in biogeochemical cycles, particularly in the degradation of organic matter and nutrient cycling within its habitat. The ability to survive and function in anaerobic conditions positions Clostridium sp. AM42-4 as a crucial player in the decomposition processes, contributing to the recycling of nutrients in ecosystems. In summary, the single replicon structure of Clostridium sp. AM42-4, alongside its association with anaerobic environments, underscores its potential ecological significance in organic matter decomposition and nutrient cycling. Further studies could elucidate its specific contributions to microbial community dynamics and ecosystem functions.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium sp. AM42-4
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clostridium sp. AM42-4 AM42-4.Scaf63, whole genome shotgun

Gene Summary

Adenine Count

927412 bp

Thymine Count

972766 bp

Guanine Count

840273 bp

Cytosine Count

912186 bp

Genome Length

3653786 bp

Protein-coding Genes

3250 genes

Non-Coding Genes

102 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nad(p)h-hydrate dehydrataseDW922_03295Not AvailablePositive741424 - 74296554691.6
alanine racemaseDW922_03300Not AvailablePositive743003 - 74417243156.5
type ii toxin-antitoxin system pemk/mazf family toxinDW922_03305Not AvailablePositive744302 - 74464912871.8
hlyc/corc family transporterDW922_03310Not AvailablePositive744743 - 74565734523.1
yebc/pmpr family dna-binding transcriptional regulatorDW922_03315Not AvailablePositive745756 - 74649327017.4
carbohydrate esterase family 12 proteinDW922_03320Not AvailableNegative746603 - 74826159226.7
3-phosphoshikimate 1-carboxyvinyltransferaseDW922_03325Not AvailableNegative748570 - 74984445032.6
prephenate dehydrogenaseDW922_03330Not AvailableNegative749949 - 75104940331.3
elongation factor gDW922_03335Not AvailablePositive751345 - 75344777723.6
cpbp family intramembrane metalloproteaseDW922_03340Not AvailablePositive753350 - 75436937958.5

Displaying genes 711 – 720 of 3352 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.