Clostridium sp. AM42-4

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Clostridium

Description

Clostridium sp. AM42-4 is characterized by possessing a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability and efficiency in various environments. The genomic data for this organism is accessible under the accession number QUIK00000000.1, which facilitates further research and exploration of its genetic makeup. As a member of the genus Clostridium, this organism likely exhibits traits common to other species within this group, such as anaerobic metabolism and the ability to produce spores. These traits are significant as they enable Clostridium species to thrive in oxygen-deprived environments, which are typical in soils, sediments, and the gastrointestinal tracts of animals. The ecological insight regarding Clostridium sp. AM42-4 relates to its potential role in biogeochemical cycles, particularly in the degradation of organic matter and nutrient cycling within its habitat. The ability to survive and function in anaerobic conditions positions Clostridium sp. AM42-4 as a crucial player in the decomposition processes, contributing to the recycling of nutrients in ecosystems. In summary, the single replicon structure of Clostridium sp. AM42-4, alongside its association with anaerobic environments, underscores its potential ecological significance in organic matter decomposition and nutrient cycling. Further studies could elucidate its specific contributions to microbial community dynamics and ecosystem functions.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium sp. AM42-4
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clostridium sp. AM42-4 AM42-4.Scaf63, whole genome shotgun

Gene Summary

Adenine Count

927412 bp

Thymine Count

972766 bp

Guanine Count

840273 bp

Cytosine Count

912186 bp

Genome Length

3653786 bp

Protein-coding Genes

3250 genes

Non-Coding Genes

102 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinDW922_02000Not AvailableNegative480058 - 48040212577.5
nadp-dependent malic enzymeDW922_02005Not AvailableNegative480753 - 48194041942.9
cupin domain-containing proteinDW922_02010Not AvailablePositive482334 - 48266612180.6
glutamate synthaseDW922_02015Not AvailablePositive483049 - 48488166834.6
hydrogenaseDW922_02020Not AvailablePositive484875 - 48661764613.4
phosphoketolase family proteinDW922_02025Not AvailableNegative486816 - 48920390385.9
lysr family transcriptional regulatorDW922_02030Not AvailablePositive489477 - 49037633722.1
atp-dependent chaperone clpbDW922_02035Not AvailableNegative490456 - 49304797125.2
phosphatase pap2 family proteinDW922_02040Not AvailableNegative493274 - 49379518838.0
biotin synthase biobDW922_02045Not AvailablePositive494143 - 49511436058.2

Displaying genes 461 – 470 of 3352 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.