Clostridium sp. AM42-4

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Clostridium

Description

Clostridium sp. AM42-4 is characterized by possessing a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability and efficiency in various environments. The genomic data for this organism is accessible under the accession number QUIK00000000.1, which facilitates further research and exploration of its genetic makeup. As a member of the genus Clostridium, this organism likely exhibits traits common to other species within this group, such as anaerobic metabolism and the ability to produce spores. These traits are significant as they enable Clostridium species to thrive in oxygen-deprived environments, which are typical in soils, sediments, and the gastrointestinal tracts of animals. The ecological insight regarding Clostridium sp. AM42-4 relates to its potential role in biogeochemical cycles, particularly in the degradation of organic matter and nutrient cycling within its habitat. The ability to survive and function in anaerobic conditions positions Clostridium sp. AM42-4 as a crucial player in the decomposition processes, contributing to the recycling of nutrients in ecosystems. In summary, the single replicon structure of Clostridium sp. AM42-4, alongside its association with anaerobic environments, underscores its potential ecological significance in organic matter decomposition and nutrient cycling. Further studies could elucidate its specific contributions to microbial community dynamics and ecosystem functions.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium sp. AM42-4
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clostridium sp. AM42-4 AM42-4.Scaf63, whole genome shotgun

Gene Summary

Adenine Count

927412 bp

Thymine Count

972766 bp

Guanine Count

840273 bp

Cytosine Count

912186 bp

Genome Length

3653786 bp

Protein-coding Genes

3250 genes

Non-Coding Genes

102 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp-galactopyranose mutaseDW922_00535Not AvailableNegative108510 - 10961342559.1
sam-dependent methyltransferaseDW922_00540Not AvailablePositive109967 - 11082732038.2
preprotein translocase subunit yajcDW922_00545Not AvailableNegative110934 - 11120910246.8
trna guanosine(34) transglycosylase tgtDW922_00550Not AvailableNegative111368 - 11250742947.6
protein translocase subunit secdDW922_00555Not AvailableNegative112510 - 11464276059.9
thioether cross-link-forming sciff peptide maturaseDW922_00560Not AvailableNegative114656 - 11605653143.0
six-cysteine peptide sciffDW922_00565Not AvailableNegative116266 - 1164125168.18
hypothetical proteinDW922_00570Not AvailableNegative116703 - 11715216911.7
metallo-dependent hydrolaseDW922_00575Not AvailableNegative117199 - 11832941164.3
trap transporter substrate-binding protein dctpDW922_00580Not AvailableNegative118449 - 11954939781.5

Displaying genes 171 – 180 of 3352 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.