Ruminococcus sp. AF20-12LB

Gram-positiveCocci

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. AF20-12LB is a gram-positive, cocci-shaped bacterium with a notable presence of flagella. This species is characterized by having a single replicon, which indicates a streamlined genetic organization that may contribute to its adaptability in various environments. The bacterium is cataloged under the accession number QUGH00000000.1, providing a reference for further studies and genetic analyses. In the context of its ecological role, Ruminococcus species are generally known to be involved in the fermentation of carbohydrates, particularly in the gastrointestinal tracts of ruminants. Their ability to break down complex polysaccharides is essential for nutrient absorption in their hosts, highlighting their importance in the digestive processes of herbivorous animals. The flagella present in Ruminococcus sp. AF20-12LB may facilitate motility, allowing the bacterium to navigate through the gut environment effectively. Understanding the specific traits of Ruminococcus sp. AF20-12LB contributes to our knowledge of gut microbiota dynamics and the role of specific microbial populations in digestion and nutrient cycling. The insights gained from studying this bacterium can inform broader ecological and biological perspectives, particularly regarding symbiotic relationships between microorganisms and their hosts in various ecosystems.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. AF20-12LB
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. AF20-12LB
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus sp. AF20-12LB AF20-12LB.Scaf44, whole genome shotgun

Gene Summary

Adenine Count

1126657 bp

Thymine Count

1102421 bp

Guanine Count

888183 bp

Cytosine Count

835879 bp

Genome Length

3953478 bp

Protein-coding Genes

3493 genes

Non-Coding Genes

104 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transposaseDWX61_00005Not AvailablePositive1 - 27810397.6
5s ribosomal rnaNot AvailableNot AvailablePositive228 - 345Not Available
ggdef domain-containing proteinDWX61_00010Not AvailablePositive424 - 92119048.0
duf4186 domain-containing proteinDWX61_00015Not AvailablePositive866 - 133618055.1
rna polymerase sigma factorDWX61_00020Not AvailablePositive1571 - 205619183.9
hypothetical proteinDWX61_00025Not AvailablePositive2053 - 279027703.0
arsenate reductase family proteinDWX61_00030Not AvailablePositive3065 - 341813637.5
yitt family proteinDWX61_00035Not AvailablePositive3415 - 426931773.6
ncs2 family permeaseDWX61_00040Not AvailableNegative4312 - 569448460.4
duf1648 domain-containing proteinDWX61_00045Not AvailablePositive5760 - 639524202.3

Displaying genes 61 – 70 of 3597 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.