Ruminococcus sp. AF20-12LB

Gram-positiveCocci

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. AF20-12LB is a gram-positive, cocci-shaped bacterium with a notable presence of flagella. This species is characterized by having a single replicon, which indicates a streamlined genetic organization that may contribute to its adaptability in various environments. The bacterium is cataloged under the accession number QUGH00000000.1, providing a reference for further studies and genetic analyses. In the context of its ecological role, Ruminococcus species are generally known to be involved in the fermentation of carbohydrates, particularly in the gastrointestinal tracts of ruminants. Their ability to break down complex polysaccharides is essential for nutrient absorption in their hosts, highlighting their importance in the digestive processes of herbivorous animals. The flagella present in Ruminococcus sp. AF20-12LB may facilitate motility, allowing the bacterium to navigate through the gut environment effectively. Understanding the specific traits of Ruminococcus sp. AF20-12LB contributes to our knowledge of gut microbiota dynamics and the role of specific microbial populations in digestion and nutrient cycling. The insights gained from studying this bacterium can inform broader ecological and biological perspectives, particularly regarding symbiotic relationships between microorganisms and their hosts in various ecosystems.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. AF20-12LB
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. AF20-12LB
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus sp. AF20-12LB AF20-12LB.Scaf44, whole genome shotgun

Gene Summary

Adenine Count

1126657 bp

Thymine Count

1102421 bp

Guanine Count

888183 bp

Cytosine Count

835879 bp

Genome Length

3953478 bp

Protein-coding Genes

3493 genes

Non-Coding Genes

104 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
azld domain-containing proteinDWX61_01280Not AvailablePositive290316 - 29063011436.7
diaminopimelate epimeraseDWX61_01285Not AvailableNegative290694 - 29154830943.9
amino acid abc transporter substrate-binding proteinDWX61_01290Not AvailablePositive291894 - 29267028243.1
amino acid abc transporter permeaseDWX61_01295Not AvailablePositive292746 - 29350728459.9
amino acid abc transporter atp-binding proteinDWX61_01300Not AvailablePositive293494 - 29423727410.3
gfo/idh/moca family oxidoreductaseDWX61_01305Not AvailableNegative294345 - 29540340104.8
rok family transcriptional regulatorDWX61_01310Not AvailableNegative295419 - 29662444523.3
gfo/idh/moca family oxidoreductaseDWX61_01315Not AvailablePositive297118 - 29815539113.3
extracellular solute-binding proteinDWX61_01320Not AvailablePositive298211 - 29946145876.3
sugar abc transporter permeaseDWX61_01325Not AvailablePositive299601 - 30048833126.5

Displaying genes 311 – 320 of 3597 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.