Ruminococcus sp. AF21-3

Gram-positiveCocci

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. AF21-3 is a Gram-positive, cocci-shaped bacterium known for its role in the digestive processes of ruminant animals. This species is characterized by the presence of flagella, which may aid in mobility within its ecological niche. Ruminococcus sp. AF21-3 has a single replicon, indicating a simplified genomic architecture that may contribute to its adaptability in various environments. The accession number for Ruminococcus sp. AF21-3 is QUGC00000000.1, which is part of genomic data that can be utilized for further study and classification within the Ruminococcus genus. These bacteria are important in the fermentation processes associated with the breakdown of complex carbohydrates in the rumen, contributing significantly to the nutritional efficiency of ruminants. Ecologically, Ruminococcus sp. AF21-3 may play a pivotal role in maintaining the health of its host by facilitating the digestion of plant materials, thus influencing nutrient availability and energy extraction. This interaction highlights the importance of microbial communities in the digestive systems of ruminants, where they contribute to the overall metabolic processes essential for the host's well-being. Understanding the traits and functions of Ruminococcus sp. AF21-3 can provide insights into microbial ecology and the symbiotic relationships that underpin the digestive health of ruminants.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. AF21-3
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. AF21-3
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus sp. AF21-3 AF21-3.Scaf197, whole genome shotgun

Gene Summary

Adenine Count

1212131 bp

Thymine Count

1205206 bp

Guanine Count

843606 bp

Cytosine Count

839452 bp

Genome Length

4100740 bp

Protein-coding Genes

3254 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptide deformylaseDWX80_01780Not AvailablePositive400810 - 40128617518.9
methionyl-trna formyltransferaseDWX80_01785Not AvailablePositive401541 - 40248834423.8
peptidaseDWX80_01790Not AvailablePositive402493 - 40318524576.3
16s rrna (cytosine(967)-c(5))-methyltransferase rsmbDWX80_01795Not AvailablePositive403178 - 40453051521.2
stp1/irep family pp2c-type ser/thr phosphataseDWX80_01805Not AvailablePositive405575 - 40632127345.6
stk1 family pasta domain-containing ser/thr kinaseDWX80_01810Not AvailablePositive406315 - 40851978904.7
ribosome small subunit-dependent gtpase aDWX80_01815Not AvailablePositive408523 - 40940133574.2
ribulose-phosphate 3-epimeraseDWX80_01820Not AvailablePositive409401 - 41007525241.5
redox-regulated atpase ychfDWX80_01830Not AvailablePositive411053 - 41215040426.3
prolipoprotein diacylglyceryl transferaseDWX80_01835Not AvailablePositive412165 - 41338846425.6

Displaying genes 321 – 330 of 3316 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.