Clostridium sp. AF34-13

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Clostridium

Description

Clostridium sp. AF34-13 is characterized by having a single replicon, which suggests a streamlined genetic structure. Its genomic data is cataloged under the accession number QUEB00000000.1. This trait indicates a potentially efficient replication process, which may be advantageous for survival in various environmental conditions. Clostridium species are generally known for their anaerobic metabolism, often thriving in low-oxygen environments. While specific metabolic pathways or ecological roles of C. sp. AF34-13 are not detailed here, the presence of a single replicon could imply a reduced genomic complexity, which is sometimes associated with specialization in niche environments. Understanding the genomic structure of Clostridium sp. AF34-13 can provide insights into its ecological interactions and potential applications. For example, single-replicon organisms can exhibit rapid adaptation rates in specific habitats, influencing their roles in nutrient cycling and interactions with other microorganisms. These traits highlight the importance of genomic analysis in understanding the ecological dynamics of microbial communities where Clostridium sp. AF34-13 might be present.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium sp. AF34-13
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clostridium sp. AF34-13 AF34-13.Scaf42, whole genome shotgun

Gene Summary

Adenine Count

1132404 bp

Thymine Count

1092230 bp

Guanine Count

671849 bp

Cytosine Count

609012 bp

Genome Length

3505684 bp

Protein-coding Genes

2935 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type iii-a crispr-associated ramp protein csm4DWZ63_01390Not AvailablePositive352315 - 35323835121.7
type iii-a crispr-associated ramp protein csm5DWZ63_01395Not AvailablePositive353242 - 35431540918.6
crispr-associated endonuclease cas1DWZ63_01400Not AvailablePositive355576 - 35658638678.8
crispr-associated endonuclease cas2DWZ63_01405Not AvailablePositive356654 - 35698312788.3
crispr-associated protein csm6DWZ63_01410Not AvailablePositive357001 - 35834151686.3
had family hydrolaseDWZ63_01415Not AvailableNegative358605 - 35939929838.7
diguanylate cyclaseDWZ63_01420Not AvailablePositive359803 - 36033019500.4
hypothetical proteinDWZ63_01425Not AvailablePositive360346 - 36062110726.9
stas domain-containing proteinDWZ63_01430Not AvailablePositive360641 - 36276477570.7
redox-regulated atpase ychfDWZ63_01435Not AvailablePositive363254 - 36435440348.8

Displaying genes 301 – 310 of 3013 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.