Clostridium sp. AF34-13

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Clostridium

Description

Clostridium sp. AF34-13 is characterized by having a single replicon, which suggests a streamlined genetic structure. Its genomic data is cataloged under the accession number QUEB00000000.1. This trait indicates a potentially efficient replication process, which may be advantageous for survival in various environmental conditions. Clostridium species are generally known for their anaerobic metabolism, often thriving in low-oxygen environments. While specific metabolic pathways or ecological roles of C. sp. AF34-13 are not detailed here, the presence of a single replicon could imply a reduced genomic complexity, which is sometimes associated with specialization in niche environments. Understanding the genomic structure of Clostridium sp. AF34-13 can provide insights into its ecological interactions and potential applications. For example, single-replicon organisms can exhibit rapid adaptation rates in specific habitats, influencing their roles in nutrient cycling and interactions with other microorganisms. These traits highlight the importance of genomic analysis in understanding the ecological dynamics of microbial communities where Clostridium sp. AF34-13 might be present.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium sp. AF34-13
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clostridium sp. AF34-13 AF34-13.Scaf42, whole genome shotgun

Gene Summary

Adenine Count

1132404 bp

Thymine Count

1092230 bp

Guanine Count

671849 bp

Cytosine Count

609012 bp

Genome Length

3505684 bp

Protein-coding Genes

2935 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphoglucosamine mutaseDWZ63_01035Not AvailablePositive262296 - 26365149544.1
trigger factorDWZ63_01040Not AvailablePositive263815 - 26510148339.3
atp-dependent clp endopeptidase proteolytic subunit clppDWZ63_01045Not AvailablePositive265231 - 26581821451.7
atp-dependent clp protease atp-binding subunit clpxDWZ63_01050Not AvailablePositive265841 - 26712447452.0
endopeptidase laDWZ63_01055Not AvailablePositive267526 - 26983585853.7
yiha family ribosome biogenesis gtp-binding proteinDWZ63_01060Not AvailablePositive269844 - 27046123268.1
hypothetical proteinDWZ63_01065Not AvailablePositive270491 - 27223063300.0
d-alanine--d-alanine ligaseDWZ63_01070Not AvailablePositive272377 - 27349240477.5
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseDWZ63_01075Not AvailablePositive273524 - 27491250720.0
phenylalanine--trna ligase subunit alphaDWZ63_01080Not AvailablePositive275493 - 27651238738.5

Displaying genes 231 – 240 of 3013 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.