Clostridium sp. AF34-13

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Clostridium

Description

Clostridium sp. AF34-13 is characterized by having a single replicon, which suggests a streamlined genetic structure. Its genomic data is cataloged under the accession number QUEB00000000.1. This trait indicates a potentially efficient replication process, which may be advantageous for survival in various environmental conditions. Clostridium species are generally known for their anaerobic metabolism, often thriving in low-oxygen environments. While specific metabolic pathways or ecological roles of C. sp. AF34-13 are not detailed here, the presence of a single replicon could imply a reduced genomic complexity, which is sometimes associated with specialization in niche environments. Understanding the genomic structure of Clostridium sp. AF34-13 can provide insights into its ecological interactions and potential applications. For example, single-replicon organisms can exhibit rapid adaptation rates in specific habitats, influencing their roles in nutrient cycling and interactions with other microorganisms. These traits highlight the importance of genomic analysis in understanding the ecological dynamics of microbial communities where Clostridium sp. AF34-13 might be present.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium sp. AF34-13
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clostridium sp. AF34-13 AF34-13.Scaf42, whole genome shotgun

Gene Summary

Adenine Count

1132404 bp

Thymine Count

1092230 bp

Guanine Count

671849 bp

Cytosine Count

609012 bp

Genome Length

3505684 bp

Protein-coding Genes

2935 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribosome maturation factor rimmDWZ63_01945Not AvailableNegative488872 - 48938119057.2
kh domain-containing proteinDWZ63_01950Not AvailableNegative489499 - 4897298383.32
30s ribosomal protein s16DWZ63_01955Not AvailableNegative489820 - 4900659173.13
signal recognition particle proteinDWZ63_01960Not AvailableNegative490147 - 49149949409.7
dna-binding proteinDWZ63_01965Not AvailableNegative491859 - 49220013307.9
hypothetical proteinDWZ63_01970Not AvailableNegative492349 - 49266011428.4
peptidaseDWZ63_01975Not AvailableNegative492893 - 49360625712.6
mate family efflux transporterDWZ63_01985Not AvailableNegative494301 - 49565049102.4
carbohydrate kinaseDWZ63_01990Not AvailableNegative496062 - 49685929965.4
restriction endonucleaseDWZ63_01995Not AvailableNegative497535 - 49845535911.4

Displaying genes 411 – 420 of 3013 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.