Clostridium sp. AF34-13

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Clostridium

Description

Clostridium sp. AF34-13 is characterized by having a single replicon, which suggests a streamlined genetic structure. Its genomic data is cataloged under the accession number QUEB00000000.1. This trait indicates a potentially efficient replication process, which may be advantageous for survival in various environmental conditions. Clostridium species are generally known for their anaerobic metabolism, often thriving in low-oxygen environments. While specific metabolic pathways or ecological roles of C. sp. AF34-13 are not detailed here, the presence of a single replicon could imply a reduced genomic complexity, which is sometimes associated with specialization in niche environments. Understanding the genomic structure of Clostridium sp. AF34-13 can provide insights into its ecological interactions and potential applications. For example, single-replicon organisms can exhibit rapid adaptation rates in specific habitats, influencing their roles in nutrient cycling and interactions with other microorganisms. These traits highlight the importance of genomic analysis in understanding the ecological dynamics of microbial communities where Clostridium sp. AF34-13 might be present.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium sp. AF34-13
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clostridium sp. AF34-13 AF34-13.Scaf42, whole genome shotgun

Gene Summary

Adenine Count

1132404 bp

Thymine Count

1092230 bp

Guanine Count

671849 bp

Cytosine Count

609012 bp

Genome Length

3505684 bp

Protein-coding Genes

2935 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type ii crispr-associated endonuclease cas1DWZ63_06580Not AvailablePositive1526203 - 152708433963.7
crispr-associated endonuclease cas2DWZ63_06585Not AvailablePositive1527089 - 152739411911.8
type ii-a crispr-associated protein csn2DWZ63_06590Not AvailablePositive1527391 - 152806226907.5
3-isopropylmalate dehydratase small subunitDWZ63_06595Not AvailablePositive1530691 - 153116417280.6
homoaconitate hydratase family proteinDWZ63_06600Not AvailablePositive1531169 - 153241644738.0
3-isopropylmalate dehydrataseDWZ63_06605Not AvailablePositive1532449 - 153294017797.4
3-isopropylmalate dehydratase large subunitDWZ63_06610Not AvailablePositive1532951 - 153419244586.9
thioredoxinDWZ63_06615Not AvailablePositive1534319 - 153461811112.4
hypothetical proteinDWZ63_06620Not AvailableNegative1534812 - 1537718104808.0
rrf2 family transcriptional regulatorDWZ63_06625Not AvailableNegative1537889 - 153832316131.5

Displaying genes 1311 – 1320 of 3013 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.