Clostridium sp. AF34-13

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Clostridium

Description

Clostridium sp. AF34-13 is characterized by having a single replicon, which suggests a streamlined genetic structure. Its genomic data is cataloged under the accession number QUEB00000000.1. This trait indicates a potentially efficient replication process, which may be advantageous for survival in various environmental conditions. Clostridium species are generally known for their anaerobic metabolism, often thriving in low-oxygen environments. While specific metabolic pathways or ecological roles of C. sp. AF34-13 are not detailed here, the presence of a single replicon could imply a reduced genomic complexity, which is sometimes associated with specialization in niche environments. Understanding the genomic structure of Clostridium sp. AF34-13 can provide insights into its ecological interactions and potential applications. For example, single-replicon organisms can exhibit rapid adaptation rates in specific habitats, influencing their roles in nutrient cycling and interactions with other microorganisms. These traits highlight the importance of genomic analysis in understanding the ecological dynamics of microbial communities where Clostridium sp. AF34-13 might be present.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium sp. AF34-13
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clostridium sp. AF34-13 AF34-13.Scaf42, whole genome shotgun

Gene Summary

Adenine Count

1132404 bp

Thymine Count

1092230 bp

Guanine Count

671849 bp

Cytosine Count

609012 bp

Genome Length

3505684 bp

Protein-coding Genes

2935 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
srtb-anchored collagen-binding adhesinDWZ63_06275Not AvailableNegative1453198 - 1456242112056.0
cytidylate kinase-like family proteinDWZ63_06280Not AvailableNegative1456649 - 145732325549.6
pucr family transcriptional regulatorDWZ63_06285Not AvailableNegative1457699 - 145888345511.4
p-ii family nitrogen regulatorDWZ63_06290Not AvailableNegative1458959 - 145931513291.0
ammonium transporterDWZ63_06295Not AvailableNegative1459402 - 146064343849.4
shikimate kinaseDWZ63_06305Not AvailableNegative1464538 - 146505319086.4
hypothetical proteinDWZ63_06310Not AvailablePositive1465212 - 14654067515.06
chemotaxis protein chevDWZ63_06315Not AvailablePositive1465566 - 146649534362.5
peptidase s8DWZ63_06320Not AvailableNegative1466639 - 146752932167.1
elongation factor pDWZ63_06325Not AvailablePositive1467847 - 146840120690.6

Displaying genes 1251 – 1260 of 3013 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.