Clostridium sp. AF34-13

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Clostridium

Description

Clostridium sp. AF34-13 is characterized by having a single replicon, which suggests a streamlined genetic structure. Its genomic data is cataloged under the accession number QUEB00000000.1. This trait indicates a potentially efficient replication process, which may be advantageous for survival in various environmental conditions. Clostridium species are generally known for their anaerobic metabolism, often thriving in low-oxygen environments. While specific metabolic pathways or ecological roles of C. sp. AF34-13 are not detailed here, the presence of a single replicon could imply a reduced genomic complexity, which is sometimes associated with specialization in niche environments. Understanding the genomic structure of Clostridium sp. AF34-13 can provide insights into its ecological interactions and potential applications. For example, single-replicon organisms can exhibit rapid adaptation rates in specific habitats, influencing their roles in nutrient cycling and interactions with other microorganisms. These traits highlight the importance of genomic analysis in understanding the ecological dynamics of microbial communities where Clostridium sp. AF34-13 might be present.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium sp. AF34-13
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clostridium sp. AF34-13 AF34-13.Scaf42, whole genome shotgun

Gene Summary

Adenine Count

1132404 bp

Thymine Count

1092230 bp

Guanine Count

671849 bp

Cytosine Count

609012 bp

Genome Length

3505684 bp

Protein-coding Genes

2935 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinDWZ63_05040Not AvailableNegative1157338 - 115760110255.5
duf552 domain-containing proteinDWZ63_05045Not AvailableNegative1157605 - 115819822585.2
yggs family pyridoxal phosphate-dependent enzymeDWZ63_05050Not AvailableNegative1158213 - 115890525787.0
hypothetical proteinDWZ63_05055Not AvailableNegative1159021 - 116041853111.1
dna internalization-related competence protein comec/rec2DWZ63_05060Not AvailableNegative1160822 - 116318589834.4
hypothetical proteinDWZ63_05065Not AvailableNegative1163243 - 116421136046.6
sensor histidine kinaseDWZ63_05070Not AvailableNegative1164389 - 116582254031.4
dna-binding response regulatorDWZ63_05075Not AvailableNegative1165857 - 116654326370.6
competence protein comeaDWZ63_05080Not AvailableNegative1166565 - 116729326469.2
aspartate aminotransferase family proteinDWZ63_05085Not AvailableNegative1167575 - 116875643283.2

Displaying genes 1011 – 1020 of 3013 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.