Pseudodesulfovibrio sp. S3

curved/spiral

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfovibrionaceae

Genus

Pseudodesulfovibrio

Description

Pseudodesulfovibrio sp. S3 is a Gram-negative bacterium characterized by its curved or spiral shape. This organism possesses a single replicon, indicating a streamlined genomic structure. The genome of Pseudodesulfovibrio sp. S3 is cataloged under the accession number QTZO00000000.1, which provides a reference point for further genomic studies and analyses. The Gram-negative nature of Pseudodesulfovibrio sp. S3 suggests that it has a double membrane structure, typical of many bacteria in this category, which can influence its interactions with the environment and its susceptibility to antibiotics. The curved or spiral morphology may confer advantages in motility and colonization within specific ecological niches. In terms of ecological significance, members of the Pseudodesulfovibrio genus are often associated with anaerobic environments, where they may play a role in the sulfur cycle. Their ability to survive in these conditions indicates they could contribute to biogeochemical processes, particularly in sediment and other anoxic habitats. Understanding the characteristics and behaviors of Pseudodesulfovibrio sp. S3 may provide insights into its ecological roles and potential applications in bioremediation or bioenergy production, where sulfur cycling is relevant.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusPseudodesulfovibrio
SpeciesPseudodesulfovibrio sp. S3
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shapecurved/spiral
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudodesulfovibrio sp. S3 NODE_2095_length_405_cov_29.9496, whole

Gene Summary

Adenine Count

785088 bp

Thymine Count

811850 bp

Guanine Count

1058292 bp

Cytosine Count

1023121 bp

Genome Length

3678351 bp

Protein-coding Genes

3354 genes

Non-Coding Genes

94 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
membrane protein insertase yidcDWB63_14700Not AvailablePositive3113314 - 311498161241.7
protein jagDWB63_14705Not AvailablePositive3115029 - 311608739819.4
trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnmeDWB63_14710Not AvailablePositive3116218 - 311760949711.4
hypothetical proteinDWB63_14715Not AvailablePositive3117611 - 31178779921.73
na+/h+ antiporter nhaaDWB63_14720Not AvailableNegative3117968 - 311932047790.5
duf2064 domain-containing proteinDWB63_14725Not AvailableNegative3119413 - 311983515328.4
phosphoribosylglycinamide formyltransferaseDWB63_14730Not AvailableNegative3120073 - 312077725412.7
hypothetical proteinDWB63_14735Not AvailablePositive3120982 - 312171327598.8
uroporphyrinogen-iii c-methyltransferaseDWB63_14740Not AvailableNegative3121782 - 312329054576.6
valine--trna ligaseDWB63_14745Not AvailableNegative3123573 - 3126239100695.0

Displaying genes 2931 – 2940 of 3448 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.