Ruminococcus sp. TF08-4

Gram-positiveCocci

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. TF08-4 is a Gram-positive bacterium characterized by its cocci shape. This species possesses flagella, indicating motility, which may play a role in its ecological interactions and nutrient acquisition. The genome of Ruminococcus sp. TF08-4 consists of a single replicon, which is indicative of its genomic organization and potential metabolic capabilities. The presence of flagella in Ruminococcus sp. TF08-4 suggests it may have adaptive advantages in its environment, potentially aiding in colonization and movement within microbial communities. Gram-positive bacteria, like this strain, often exhibit cell wall structures that can influence their interactions with other microorganisms and host organisms. These traits contribute to the bacterium’s ability to thrive in specific ecological niches, particularly in environments rich in complex organic materials. Ruminococcus species are commonly associated with the fermentation of dietary fibers in the gastrointestinal tracts of various animals, including ruminants. This suggests that Ruminococcus sp. TF08-4 may play a significant role in the breakdown of polysaccharides, contributing to nutrient cycling and overall gut health. Understanding the specific functions and ecological roles of Ruminococcus sp. TF08-4 may provide insights into its contributions to microbial communities, particularly in relation to fiber digestion and the maintenance of a healthy gut microbiome. The accession number for this strain is QTYY00000000.1, which can be used for further genomic analysis and research.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. TF08-4
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. TF08-4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus sp. TF08-4 TF08-4.Scaf49, whole genome shotgun

Gene Summary

Adenine Count

952563 bp

Thymine Count

957119 bp

Guanine Count

639516 bp

Cytosine Count

648854 bp

Genome Length

3198380 bp

Protein-coding Genes

2793 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aaa family atpaseDXC84_01490Not AvailablePositive324739 - 32685681140.0
5-methylcytosine-specific restriction endonuclease system specificity protein mcrcDXC84_01495Not AvailablePositive326853 - 32788139815.6
hypothetical proteinDXC84_01500Not AvailableNegative327949 - 32826912864.7
hnh endonucleaseDXC84_01505Not AvailableNegative328235 - 32938045145.7
1,4-alpha-glucan branching protein glgbDXC84_01515Not AvailableNegative329801 - 33172674687.2
hypothetical proteinDXC84_01520Not AvailableNegative331967 - 335152120437.0
methionine--trna ligaseDXC84_01525Not AvailableNegative335937 - 33783871797.3
sensor histidine kinaseDXC84_01530Not AvailableNegative338382 - 341072101199.0
dna-binding response regulatorDXC84_01535Not AvailableNegative341098 - 34179326372.2
undecaprenyl-diphosphate phosphataseDXC84_01540Not AvailablePositive342068 - 34295832954.7

Displaying genes 291 – 300 of 2849 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.