Ruminococcus sp. TF08-4

Gram-positiveCocci

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. TF08-4 is a Gram-positive bacterium characterized by its cocci shape. This species possesses flagella, indicating motility, which may play a role in its ecological interactions and nutrient acquisition. The genome of Ruminococcus sp. TF08-4 consists of a single replicon, which is indicative of its genomic organization and potential metabolic capabilities. The presence of flagella in Ruminococcus sp. TF08-4 suggests it may have adaptive advantages in its environment, potentially aiding in colonization and movement within microbial communities. Gram-positive bacteria, like this strain, often exhibit cell wall structures that can influence their interactions with other microorganisms and host organisms. These traits contribute to the bacterium’s ability to thrive in specific ecological niches, particularly in environments rich in complex organic materials. Ruminococcus species are commonly associated with the fermentation of dietary fibers in the gastrointestinal tracts of various animals, including ruminants. This suggests that Ruminococcus sp. TF08-4 may play a significant role in the breakdown of polysaccharides, contributing to nutrient cycling and overall gut health. Understanding the specific functions and ecological roles of Ruminococcus sp. TF08-4 may provide insights into its contributions to microbial communities, particularly in relation to fiber digestion and the maintenance of a healthy gut microbiome. The accession number for this strain is QTYY00000000.1, which can be used for further genomic analysis and research.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. TF08-4
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. TF08-4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus sp. TF08-4 TF08-4.Scaf49, whole genome shotgun

Gene Summary

Adenine Count

952563 bp

Thymine Count

957119 bp

Guanine Count

639516 bp

Cytosine Count

648854 bp

Genome Length

3198380 bp

Protein-coding Genes

2793 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp-binding proteinDXC84_13405Not AvailablePositive2911524 - 291284350385.9
bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinaseDXC84_13410Not AvailableNegative2912882 - 291369128587.1
Trna-glyNot AvailableNot AvailablePositive2913810 - 2913880Not Available
hypothetical proteinDXC84_13420Not AvailableNegative2913990 - 291514145269.6
crp/fnr family transcriptional regulatorDXC84_13425Not AvailablePositive2915475 - 291617627469.7
xanthine dehydrogenase molybdenum-binding subunit xdhaDXC84_13430Not AvailablePositive2916206 - 291851585649.0
xanthine dehydrogenase fad-binding subunit xdhbDXC84_13435Not AvailablePositive2918508 - 291939532049.5
(2fe-2s)-binding proteinDXC84_13440Not AvailablePositive2919388 - 291989418522.4
purine permeaseDXC84_13445Not AvailablePositive2920053 - 292146249859.1
had family hydrolaseDXC84_13450Not AvailableNegative2921609 - 292232226842.2

Displaying genes 2581 – 2590 of 2849 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.