Ruminococcus sp. TF08-4

Gram-positiveCocci

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. TF08-4 is a Gram-positive bacterium characterized by its cocci shape. This species possesses flagella, indicating motility, which may play a role in its ecological interactions and nutrient acquisition. The genome of Ruminococcus sp. TF08-4 consists of a single replicon, which is indicative of its genomic organization and potential metabolic capabilities. The presence of flagella in Ruminococcus sp. TF08-4 suggests it may have adaptive advantages in its environment, potentially aiding in colonization and movement within microbial communities. Gram-positive bacteria, like this strain, often exhibit cell wall structures that can influence their interactions with other microorganisms and host organisms. These traits contribute to the bacterium’s ability to thrive in specific ecological niches, particularly in environments rich in complex organic materials. Ruminococcus species are commonly associated with the fermentation of dietary fibers in the gastrointestinal tracts of various animals, including ruminants. This suggests that Ruminococcus sp. TF08-4 may play a significant role in the breakdown of polysaccharides, contributing to nutrient cycling and overall gut health. Understanding the specific functions and ecological roles of Ruminococcus sp. TF08-4 may provide insights into its contributions to microbial communities, particularly in relation to fiber digestion and the maintenance of a healthy gut microbiome. The accession number for this strain is QTYY00000000.1, which can be used for further genomic analysis and research.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. TF08-4
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. TF08-4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus sp. TF08-4 TF08-4.Scaf49, whole genome shotgun

Gene Summary

Adenine Count

952563 bp

Thymine Count

957119 bp

Guanine Count

639516 bp

Cytosine Count

648854 bp

Genome Length

3198380 bp

Protein-coding Genes

2793 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
electron transport complex subunit rsxeDXC84_07015Not AvailableNegative1569228 - 156994425270.7
rnfabcdge type electron transport complex subunit gDXC84_07020Not AvailableNegative1569937 - 157055121488.9
rnfabcdge type electron transport complex subunit dDXC84_07025Not AvailableNegative1570551 - 157148333475.0
electron transport complex subunit rsxcDXC84_07030Not AvailableNegative1571500 - 157281947709.2
30s ribosomal protein s1DXC84_07035Not AvailableNegative1573017 - 157409339410.9
4-hydroxy-3-methylbut-2-enyl diphosphate reductaseDXC84_07040Not AvailableNegative1574074 - 157492831950.1
(d)cmp kinaseDXC84_07045Not AvailableNegative1574949 - 157560824543.6
nad(p)/fad-dependent oxidoreductaseDXC84_07050Not AvailableNegative1575733 - 157696845341.9
murr/rpir family transcriptional regulatorDXC84_07055Not AvailableNegative1576972 - 157789234294.3
aminopeptidase p family proteinDXC84_07060Not AvailableNegative1578020 - 157982268404.3

Displaying genes 1341 – 1350 of 2849 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.