Ruminococcus sp. AM28-29LB

Gram-positiveCocci

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. AM28-29LB is a gram-positive bacterium characterized by its cocci shape. This organism possesses flagella, indicating motility, which may play a role in its ecological niche. Ruminococcus species are typically known for their involvement in the fermentation processes within the gastrointestinal tract of ruminants, contributing to the breakdown of complex carbohydrates. The strain AM28-29LB has a single replicon, which is indicative of its genetic organization. Such a feature can be significant in understanding its replication and stability within its environment. The genetic information for this strain is documented under the accession number QTYN00000000.1, providing a reference point for further studies or comparative analyses with other bacterial strains. As a member of the Ruminococcus genus, it is likely that AM28-29LB plays a role in the microbial community associated with ruminant digestion, potentially aiding in the digestion of fibrous plant material. The presence of flagella may enhance its ability to colonize specific niches within the gut and contribute to the overall functionality of the microbiome in ruminants. In summary, Ruminococcus sp. AM28-29LB is a gram-positive, motile cocci with a single replicon, likely playing a significant role in the fermentation processes essential for ruminant digestion. Its traits suggest a specialized adaptation to its ecological role, contributing to the complex interplay of microorganisms in the gastrointestinal tract.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. AM28-29LB
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. AM28-29LB
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus sp. AM28-29LB AM28-29LB.Scaf35, whole genome shotgun

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2098 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protease lon-related brex system protein brxlDW745_07815Not AvailablePositive1574234 - 157626475414.0
wyl domain-containing transcriptional regulatorDW745_07820Not AvailablePositive1576329 - 157731237922.6
duf1016 domain-containing proteinDW745_07825Not AvailablePositive1577344 - 157844443168.3
repressor lexaDW745_07830Not AvailablePositive1578672 - 157927122454.8
imma/irre family metallo-endopeptidaseDW745_07835Not AvailablePositive1579402 - 158012727511.0
hypothetical proteinDW745_07840Not AvailablePositive1580124 - 15803729710.96
sigma-70 family rna polymerase sigma factorDW745_07845Not AvailablePositive1580684 - 158127122991.3
type ii toxin-antitoxin system pemk/mazf family toxinDW745_07850Not AvailablePositive1581377 - 158193721610.1
helix-turn-helix domain-containing proteinDW745_07855Not AvailablePositive1581930 - 15821518603.41
helix-turn-helix domain-containing proteinDW745_07860Not AvailablePositive1582245 - 15824638555.3

Displaying genes 1481 – 1490 of 2177 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.