Ruminococcus sp. AF12-5

Gram-positiveCocci

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. AF12-5 is a Gram-positive bacterium characterized by its cocci shape. This species possesses flagella, which are essential for motility, enabling it to navigate its environment effectively. Ruminococcus sp. AF12-5 is notable for having a single replicon, which is indicative of its genomic structure. The accession number for Ruminococcus sp. AF12-5 is QTXN00000000.1, providing a reference point for further genomic studies and analysis. The presence of flagella in this organism may suggest an adaptation to its ecological niche, potentially allowing it to thrive in diverse environments, such as the gastrointestinal tracts of ruminants. From a biological perspective, the traits of Ruminococcus sp. AF12-5 highlight its potential role in the microbial community, particularly in relation to digestion and nutrient cycling in ruminants. The ability to move through the gut environment may enhance its capacity to interact with other microbial species and contribute to the overall health and functionality of the host's digestive system. Understanding the characteristics of Ruminococcus sp. AF12-5 can provide insights into its ecological significance and potential applications in microbiome research and livestock management.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. AF12-5
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. AF12-5
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus sp. AF12-5 AF12-5.Scaf23, whole genome shotgun

Gene Summary

Adenine Count

1046027 bp

Thymine Count

956242 bp

Guanine Count

737685 bp

Cytosine Count

610228 bp

Genome Length

3350417 bp

Protein-coding Genes

2956 genes

Non-Coding Genes

132 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter substrate-binding proteinDWV75_11040Not AvailableNegative2295271 - 229684558988.4
sugar-binding domain proteinDWV75_11045Not AvailableNegative2297065 - 2301966179116.0
sodium:alanine symporter family proteinDWV75_11050Not AvailableNegative2302503 - 230390049231.1
amidohydrolaseDWV75_11055Not AvailableNegative2304017 - 230533347260.2
metal abc transporter substrate-binding proteinDWV75_11060Not AvailableNegative2305355 - 230620330816.7
abc transporter permeaseDWV75_11065Not AvailableNegative2306235 - 230690323918.3
atp-binding cassette domain-containing proteinDWV75_11070Not AvailableNegative2306903 - 230792838022.7
sam-dependent methyltransferaseDWV75_11075Not AvailablePositive2308271 - 230913132266.5
j domain-containing proteinDWV75_11080Not AvailableNegative2309320 - 231036036927.3
asp-trna(asn)/glu-trna(gln) amidotransferase subunit gatbDWV75_11085Not AvailableNegative2310705 - 231213853909.4

Displaying genes 2131 – 2140 of 3088 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.